Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0715500-03
CDS Infomation	cds chromosome:IRGSP-1.0:3:28964618:28973595:-1 gene:Os03g0715500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsTVLP1 description:Armadillo-type fold domain containing protein. (Os03t0715500-01);Armadillo-type fold domain containing protein. (Os03t0715500-02);Similar to TVLP1. (Os03t0715500-03)
Sequence	GAATTTGGAGTTCCGGATACCGTGAAATCAATGGCCTGGTGTGGCGACAACATTTGTCTT GGGATTAGAAAGGAGTATATGATCATAAATAGTATGACTGGTGCATTAACTGAAGTGTTT TCTTCTGGAAGGAATGCTCCACCTTTAGTTGTGGCTCTTCCTACTGGGGAGCTCCTCCTG GGAAAGGATAATATTGGAGTATTTGTTGACCAAAATGGGAAACTTATTCAAGATGGCAGG ATAATTTGGTCAGACACGCCTGCCTCTGTTGCTATACATAGGCCATATGCGGTGGCACGC CTGCCACGGCATGTTGAGATACGGTCCCTTAGAGCCCCCAATGCATTGGTTCAGACGGTT GTACTTCGTGATGTTCAAAAGCTTGTTGAAACTGAGAACTGTATACTTGCTGTGCTAGCC CGCTCTGTTTATGGCTTGTTGCCTGTTCCTATTGGTGCCCAGATAGTGCAGTTGACTGCA TCTGGTGAATTTGAGGAGGCTCTGGCGTTGTGTAAGCTACTTCCTCCAGAGGATTCAAAC CTACGAGCTGCAAAGGAAAGCTCAATACACATAAGATATGGACACTTTTTATTTGATAAT GGGAGCTATGAGGAGGCAATGGAGCAGTTCTCTGATTCACATGTGGATATTACTTATGTC CTATCTCTATATCCATCTCTTGTTCTGCCTCAAACGCACATCATAGGTGAACATGACCGG CTGCAAGATCTGCCAGAATTAGCAAGAGAATCATCTGATGTGACAGATGATATGGAACCA TACTCTCTACAACTTCATGAATCTGATGATAAATCTCCATTGGAGATAAAGAAAATGAGC CACAATGCTCTAATTGCCCTTGTGAAGTATTTGCACAAGAAAAGAAATGGAATAATTGAG AGAGCAACAGCTGAAGTCACCGAGGAGGTGGTCTCTGGAGCTGTGCACCACAGCTCAATC TTATCTGAGTCATATCGATCAAAGAAGCCAAATAAGAAGCGAGCTCAGACGCATACAAGC TCTATTGCTAGAGAAATGGCTACTGTACTGGACACATCTCTTCTTCAAGCTCTTATTCTT ACTGGACAGTCTTCAGGGGCAATAGAATTGTTGAAGGGACTTAACTATTGTGATCTGAAG ATATGCAAAGAATTTTTAGAGGAAAGGAGCGATTATATGGTGTTACTTGAGCTCTACAAA AGCAATGAGATGCACCGTGAAGCTCTCCAACTGCTTAATCAATTAGTTGAAGAATCAAAG GCTGAGATGGGAAAAAATGATTTTAACAAAAAGTTCAATCCACAAATGATCATTGAATAT CTAAGGCCCCTCTGTCGGTCTGACCCAATGCTGGTTTTGGAATCATCTTTATATGTCCTT GAACGCAACCCTTCAGACACTATTGAGCTCTTTTTATCAGAAAATGTTCCAGCAGATTTA GTAAATTCATATCTAAAACAGCATGCTCCAAATTTGCAGTCAACTTACTTGGAACTAATG CTTTCAATGAGTGTATCTGGGATCAACCCTAATCTGCAAAATGAGCTGGTACAACTATAC CTTTCTGAGGTTCTTGACTGGCACAAGATTCTGAAGGAAGAGGGAAACTGGACTGAGAAA ACATATTCCCCAACACGGAAGAAGCTGATAACTACATTAGAGAACAATTCAGGTTACAAC ACAGATATACTTCTTAAGCGTCTTCCGCAAGATGCTCTTTTTGAAGAGCGCGCTATATTG TATGGGAAAATAAATCAACATCTCCGTGCACTCTCTCTTTATGTGCATAAGCTCCAGATG CCAGAGCGAGCAGTTGCATATTGTGACCGTGTTTACGAGGAAGGAGCACAACAACCTTCC AAATCAAATATCTATTTCAATCTCCTACAAATCTATCTGAACCCAAGAAAAGCTGAAAAG GAATTTGAGCAGAAAATTGTTCCAGTGGCATCACAGTACCCTGGAATTCAGAAGGTTACT AAGGTTAGAGGGGCGCGTATGGGTAAAAAGGTTGTTGAGATTGAAGGGGCTGATGATGTG CGCTTTAGCCCCAGTGGAACTGATAGTGGTCGAAGTGATGGTGATGGTGATGGTGATGAT GTTAGTGATGGAGGCCCAATAATGTTGAATGAAGCACTTGAATTGTTAAGCCAACGGTGG GATAGAATAAATGGTGCCCAAGCTCTTCGTTTGTTACCTAGAGACACGAAACTCCAGGAT CTGGTGTTATTTCTTGAACCACTTCTGCGGAACTCTAGTGAACATCGACGCAATTATATG GTTATCAAGAACTTGATTTTTCGGGCAAATTTGCAGGTAAAGGAGGATCTGTATAAACGG CGTCAAGCTGTTCTGAAGATTGATGGAGATAGCATGTGTTCTCTTTGTCATAAGCGGATT GCAAATAGTGCTTTTGCTATTTATCCAAATGGGCAGACGTTGGTGCATTTTGTCTGCTTT AGAGAATCACAGCAGATTAAAGCTGTTAGAGGAGTAAACTCTGTGAAACGTAGATAG

Peptide Sequence

PEP ID	Os03t0715500-03
PEP Infomation	pep chromosome:IRGSP-1.0:3:28964618:28973595:-1 gene:Os03g0715500 transcript:Os03t0715500-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsTVLP1 description:Armadillo-type fold domain containing protein. (Os03t0715500-01);Armadillo-type fold domain containing protein. (Os03t0715500-02);Similar to TVLP1. (Os03t0715500-03)
Sequence	EFGVPDTVKSMAWCGDNICLGIRKEYMIINSMTGALTEVFSSGRNAPPLVVALPTGELLL GKDNIGVFVDQNGKLIQDGRIIWSDTPASVAIHRPYAVARLPRHVEIRSLRAPNALVQTV VLRDVQKLVETENCILAVLARSVYGLLPVPIGAQIVQLTASGEFEEALALCKLLPPEDSN LRAAKESSIHIRYGHFLFDNGSYEEAMEQFSDSHVDITYVLSLYPSLVLPQTHIIGEHDR LQDLPELARESSDVTDDMEPYSLQLHESDDKSPLEIKKMSHNALIALVKYLHKKRNGIIE RATAEVTEEVVSGAVHHSSILSESYRSKKPNKKRAQTHTSSIAREMATVLDTSLLQALIL TGQSSGAIELLKGLNYCDLKICKEFLEERSDYMVLLELYKSNEMHREALQLLNQLVEESK AEMGKNDFNKKFNPQMIIEYLRPLCRSDPMLVLESSLYVLERNPSDTIELFLSENVPADL VNSYLKQHAPNLQSTYLELMLSMSVSGINPNLQNELVQLYLSEVLDWHKILKEEGNWTEK TYSPTRKKLITTLENNSGYNTDILLKRLPQDALFEERAILYGKINQHLRALSLYVHKLQM PERAVAYCDRVYEEGAQQPSKSNIYFNLLQIYLNPRKAEKEFEQKIVPVASQYPGIQKVT KVRGARMGKKVVEIEGADDVRFSPSGTDSGRSDGDGDGDDVSDGGPIMLNEALELLSQRW DRINGAQALRLLPRDTKLQDLVLFLEPLLRNSSEHRRNYMVIKNLIFRANLQVKEDLYKR RQAVLKIDGDSMCSLCHKRIANSAFAIYPNGQTLVHFVCFRESQQIKAVRGVNSVKRR

Transcript Sequence

Transcript ID	Os03t0715500-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:28964618:28973595:-1 gene:Os03g0715500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsTVLP1 description:Armadillo-type fold domain containing protein. (Os03t0715500-01);Armadillo-type fold domain containing protein. (Os03t0715500-02);Similar to TVLP1. (Os03t0715500-03)
Sequence	GGAATTTGGAGTTCCGGATACCGTGAAATCAATGGCCTGGTGTGGCGACAACATTTGTCT TGGGATTAGAAAGGAGTATATGATCATAAATAGTATGACTGGTGCATTAACTGAAGTGTT TTCTTCTGGAAGGAATGCTCCACCTTTAGTTGTGGCTCTTCCTACTGGGGAGCTCCTCCT GGGAAAGGATAATATTGGAGTATTTGTTGACCAAAATGGGAAACTTATTCAAGATGGCAG GATAATTTGGTCAGACACGCCTGCCTCTGTTGCTATACATAGGCCATATGCGGTGGCACG CCTGCCACGGCATGTTGAGATACGGTCCCTTAGAGCCCCCAATGCATTGGTTCAGACGGT TGTACTTCGTGATGTTCAAAAGCTTGTTGAAACTGAGAACTGTATACTTGCTGTGCTAGC CCGCTCTGTTTATGGCTTGTTGCCTGTTCCTATTGGTGCCCAGATAGTGCAGTTGACTGC ATCTGGTGAATTTGAGGAGGCTCTGGCGTTGTGTAAGCTACTTCCTCCAGAGGATTCAAA CCTACGAGCTGCAAAGGAAAGCTCAATACACATAAGATATGGACACTTTTTATTTGATAA TGGGAGCTATGAGGAGGCAATGGAGCAGTTCTCTGATTCACATGTGGATATTACTTATGT CCTATCTCTATATCCATCTCTTGTTCTGCCTCAAACGCACATCATAGGTGAACATGACCG GCTGCAAGATCTGCCAGAATTAGCAAGAGAATCATCTGATGTGACAGATGATATGGAACC ATACTCTCTACAACTTCATGAATCTGATGATAAATCTCCATTGGAGATAAAGAAAATGAG CCACAATGCTCTAATTGCCCTTGTGAAGTATTTGCACAAGAAAAGAAATGGAATAATTGA GAGAGCAACAGCTGAAGTCACCGAGGAGGTGGTCTCTGGAGCTGTGCACCACAGCTCAAT CTTATCTGAGTCATATCGATCAAAGAAGCCAAATAAGAAGCGAGCTCAGACGCATACAAG CTCTATTGCTAGAGAAATGGCTACTGTACTGGACACATCTCTTCTTCAAGCTCTTATTCT TACTGGACAGTCTTCAGGGGCAATAGAATTGTTGAAGGGACTTAACTATTGTGATCTGAA GATATGCAAAGAATTTTTAGAGGAAAGGAGCGATTATATGGTGTTACTTGAGCTCTACAA AAGCAATGAGATGCACCGTGAAGCTCTCCAACTGCTTAATCAATTAGTTGAAGAATCAAA GGCTGAGATGGGAAAAAATGATTTTAACAAAAAGTTCAATCCACAAATGATCATTGAATA TCTAAGGCCCCTCTGTCGGTCTGACCCAATGCTGGTTTTGGAATCATCTTTATATGTCCT TGAACGCAACCCTTCAGACACTATTGAGCTCTTTTTATCAGAAAATGTTCCAGCAGATTT AGTAAATTCATATCTAAAACAGCATGCTCCAAATTTGCAGTCAACTTACTTGGAACTAAT GCTTTCAATGAGTGTATCTGGGATCAACCCTAATCTGCAAAATGAGCTGGTACAACTATA CCTTTCTGAGGTTCTTGACTGGCACAAGATTCTGAAGGAAGAGGGAAACTGGACTGAGAA AACATATTCCCCAACACGGAAGAAGCTGATAACTACATTAGAGAACAATTCAGGTTACAA CACAGATATACTTCTTAAGCGTCTTCCGCAAGATGCTCTTTTTGAAGAGCGCGCTATATT GTATGGGAAAATAAATCAACATCTCCGTGCACTCTCTCTTTATGTGCATAAGCTCCAGAT GCCAGAGCGAGCAGTTGCATATTGTGACCGTGTTTACGAGGAAGGAGCACAACAACCTTC CAAATCAAATATCTATTTCAATCTCCTACAAATCTATCTGAACCCAAGAAAAGCTGAAAA GGAATTTGAGCAGAAAATTGTTCCAGTGGCATCACAGTACCCTGGAATTCAGAAGGTTAC TAAGGTTAGAGGGGCGCGTATGGGTAAAAAGGTTGTTGAGATTGAAGGGGCTGATGATGT GCGCTTTAGCCCCAGTGGAACTGATAGTGGTCGAAGTGATGGTGATGGTGATGGTGATGA TGTTAGTGATGGAGGCCCAATAATGTTGAATGAAGCACTTGAATTGTTAAGCCAACGGTG GGATAGAATAAATGGTGCCCAAGCTCTTCGTTTGTTACCTAGAGACACGAAACTCCAGGA TCTGGTGTTATTTCTTGAACCACTTCTGCGGAACTCTAGTGAACATCGACGCAATTATAT GGTTATCAAGAACTTGATTTTTCGGGCAAATTTGCAGGTAAAGGAGGATCTGTATAAACG GCGTCAAGCTGTTCTGAAGATTGATGGAGATAGCATGTGTTCTCTTTGTCATAAGCGGAT TGCAAATAGTGCTTTTGCTATTTATCCAAATGGGCAGACGTTGGTGCATTTTGTCTGCTT TAGAGAATCACAGCAGATTAAAGCTGTTAGAGGAGTAAACTCTGTGAAACGTAGATAGCA TGTACATTCACCAGGTGTGAGTATCATCATAGAAAAAAGGATGCAACGTTCGCATTTTCT GCACATCTTTGGAACAGCAAGCCAACAAGCATGCAAGATTTGGGTCCTCAGCACTTGCTG ATTCACGTTGCTTGATGTTTCTGATCGAGAGGCGTTGCTTGATTTCTGATCGAGATTTCT TTTGTTTCTGTTGCCTTTACGCGGCTTGGTTTGCTTCATGTATTTTTACTGGCGTTTTCT TCCGCTCTTCAGAGCGTTGGTGTATTCAGTCTGCGCGTGTCTGCCTATCAGTTCGCTTTC GCTTGTTTTTTATGCCCAGAAAGCGTACAAAAATGTAGATGAAAACGTTGTAAAGTTTAG ATTAGGTGTGACCGTGATCAGTGTTGTGTTTAATCACCATGTAAACAGGGAAACATAATA GCTAAGTGCTTATGTTTTAATTGAAATATTAATCATAGTAAAGGAGCACTTCCTTTTTCA TC