Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0712200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:28774588:28777241:1 gene:Os03g0712200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RanBP2-type domain containing protein. (Os03t0712200-01)
Sequence

ATGCGCCACCGCGTCGGCCCCGCCGCCGCCGCCGCGGCGGCGCTCCGGCGGTTCTCCCAC
CTCCGCCCGCCGGCCCCGCCGGACCCGAGGCTCGCCTTCCTTCGCTCAGAGTTTGATGGC
CGTGAGCCCGGCCGACAGCCACCGTCACCGGAAACAAGAGAGGAGCCAAAAGGTGGCGAG
CGCGCGCGCTCGCCGGTGGCCGTGGATATCGCGCACCCGTGGCCGGAGTGGGTGGCGCTG
ATGGAGCTCCTCCTTCAGAGGGGCCACCTCGACGCCTCCGTGTTCGCCGGCGGCGCGGCT
GGCTCGCCGTCCAAGGATTCCAACGTTATCCGCACCGCCTGCCTCCGGTTTGGGCGAGAG
CGGCCGGAGCTTATCAGGCATCTATCAAGATGGGATATCCAGGTTGCTCTCCGGTATGGG
TGCCCCAGCATTGACAGGAAGGTTGTTAATTCTGGGAAGCGATTACGTGCTCATGTAGGC
CTTGATGAAGGAGAGGTCTGCAGCCAATGCAATTTAAGGGGTGGATGCGAGAGGGCATAT
GTAAAGGCTCGGAAGGAGGAAATTGGAAGAACTGTGGATGTTATGCGCATCCTTTTGACT
TATGGGCTTGACACAGTTACTGGCAATGTGGAGAACAGAGCATGTCTAAACAAAACCGTT
AAAGAATCCATTAAGAGCCTACTTAATGAGATTGTTGGGTTCGATTCCATGGGTCCTGGT
TCCAGCACTGAAAAGCCCACACACCGTATGCCAAAAGGACAATCTTCTATTCCTATGAAG
CAGGGTGATTGGAATTGTCCCAAATGCAACTTCTTGAACTTTGCAAAGAATATAAAATGT
TTACGCTGCAATGGAGAATTTGAAGAGAGGTATCAGCTGCTCCATGAGAACCAAGAGCAT
CTTCCTCTCAAAAAGGGTGATTGGATATGCAAAAGGTGCAACTTTTTGAATTTTGCAAAG
AATACAAGATGCCTTCAGTGCCATGAGAAACCAACAAACCGTCAACTCAATCCAGGGGAA
TGGGAGTGTGTCTCGTGTAATTATTTGAACTTCAAGAGGAATGCATTCTGTTTGAAATGT
GGTTGGAAAAGACCAAAATCATTGAACAACCAAGACAGTATTGAATCACAACGTGACTTA
GATGATAATAAGCATTCTGCTATTTCATTTATCCAAGATGGCATCCAATCGAGGAGGCAA
ATTCTGCAAAATAAGGCTCCATTGTCTGACGAAGATTCAGACTTCTGGAGCTCCGAGGAG
GAAGGGGCCTACCACAGTGACAAAAACATTCCCCCAATAAAGAAGGATTACAAGTTCCTT
GAAAGTTTTCCCATCATTGGGGGTAGGACTGCTATGTCTCAAGATCCTCTTGAGAGGGAG
AAATGGAAGGACGAAATGTCCAGGAGAAACAAAGGGCTCCTAACAGAAGTATCAGAAGAA
AGTAATCGGCCTTCGTGCCCCGTTCGTATTCCGAGAAGCATTGAGCAGATTGAATCTGGT
GACGACGACGACGACGACATTTCATCATGGTTTTCTGGTGGTACTAGTAATATTAACATG
AAAAAGGCATAG

Peptide Sequence

PEP ID

Os03t0712200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:28774588:28777241:1 gene:Os03g0712200 transcript:Os03t0712200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RanBP2-type domain containing protein. (Os03t0712200-01)
Sequence

MRHRVGPAAAAAAALRRFSHLRPPAPPDPRLAFLRSEFDGREPGRQPPSPETREEPKGGE
RARSPVAVDIAHPWPEWVALMELLLQRGHLDASVFAGGAAGSPSKDSNVIRTACLRFGRE
RPELIRHLSRWDIQVALRYGCPSIDRKVVNSGKRLRAHVGLDEGEVCSQCNLRGGCERAY
VKARKEEIGRTVDVMRILLTYGLDTVTGNVENRACLNKTVKESIKSLLNEIVGFDSMGPG
SSTEKPTHRMPKGQSSIPMKQGDWNCPKCNFLNFAKNIKCLRCNGEFEERYQLLHENQEH
LPLKKGDWICKRCNFLNFAKNTRCLQCHEKPTNRQLNPGEWECVSCNYLNFKRNAFCLKC
GWKRPKSLNNQDSIESQRDLDDNKHSAISFIQDGIQSRRQILQNKAPLSDEDSDFWSSEE
EGAYHSDKNIPPIKKDYKFLESFPIIGGRTAMSQDPLEREKWKDEMSRRNKGLLTEVSEE
SNRPSCPVRIPRSIEQIESGDDDDDDISSWFSGGTSNINMKKA

Transcript Sequence

Transcript ID

Os03t0712200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:28774588:28777241:1 gene:Os03g0712200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RanBP2-type domain containing protein. (Os03t0712200-01)
Sequence

ACGGCTGCTTGCTTTTGCGCAAGTTTCAAGCGATGCGCCACCGCGTCGGCCCCGCCGCCG
CCGCCGCGGCGGCGCTCCGGCGGTTCTCCCACCTCCGCCCGCCGGCCCCGCCGGACCCGA
GGCTCGCCTTCCTTCGCTCAGAGTTTGATGGCCGTGAGCCCGGCCGACAGCCACCGTCAC
CGGAAACAAGAGAGGAGCCAAAAGGTGGCGAGCGCGCGCGCTCGCCGGTGGCCGTGGATA
TCGCGCACCCGTGGCCGGAGTGGGTGGCGCTGATGGAGCTCCTCCTTCAGAGGGGCCACC
TCGACGCCTCCGTGTTCGCCGGCGGCGCGGCTGGCTCGCCGTCCAAGGATTCCAACGTTA
TCCGCACCGCCTGCCTCCGGTTTGGGCGAGAGCGGCCGGAGCTTATCAGGCATCTATCAA
GATGGGATATCCAGGTTGCTCTCCGGTATGGGTGCCCCAGCATTGACAGGAAGGTTGTTA
ATTCTGGGAAGCGATTACGTGCTCATGTAGGCCTTGATGAAGGAGAGGTCTGCAGCCAAT
GCAATTTAAGGGGTGGATGCGAGAGGGCATATGTAAAGGCTCGGAAGGAGGAAATTGGAA
GAACTGTGGATGTTATGCGCATCCTTTTGACTTATGGGCTTGACACAGTTACTGGCAATG
TGGAGAACAGAGCATGTCTAAACAAAACCGTTAAAGAATCCATTAAGAGCCTACTTAATG
AGATTGTTGGGTTCGATTCCATGGGTCCTGGTTCCAGCACTGAAAAGCCCACACACCGTA
TGCCAAAAGGACAATCTTCTATTCCTATGAAGCAGGGTGATTGGAATTGTCCCAAATGCA
ACTTCTTGAACTTTGCAAAGAATATAAAATGTTTACGCTGCAATGGAGAATTTGAAGAGA
GGTATCAGCTGCTCCATGAGAACCAAGAGCATCTTCCTCTCAAAAAGGGTGATTGGATAT
GCAAAAGGTGCAACTTTTTGAATTTTGCAAAGAATACAAGATGCCTTCAGTGCCATGAGA
AACCAACAAACCGTCAACTCAATCCAGGGGAATGGGAGTGTGTCTCGTGTAATTATTTGA
ACTTCAAGAGGAATGCATTCTGTTTGAAATGTGGTTGGAAAAGACCAAAATCATTGAACA
ACCAAGACAGTATTGAATCACAACGTGACTTAGATGATAATAAGCATTCTGCTATTTCAT
TTATCCAAGATGGCATCCAATCGAGGAGGCAAATTCTGCAAAATAAGGCTCCATTGTCTG
ACGAAGATTCAGACTTCTGGAGCTCCGAGGAGGAAGGGGCCTACCACAGTGACAAAAACA
TTCCCCCAATAAAGAAGGATTACAAGTTCCTTGAAAGTTTTCCCATCATTGGGGGTAGGA
CTGCTATGTCTCAAGATCCTCTTGAGAGGGAGAAATGGAAGGACGAAATGTCCAGGAGAA
ACAAAGGGCTCCTAACAGAAGTATCAGAAGAAAGTAATCGGCCTTCGTGCCCCGTTCGTA
TTCCGAGAAGCATTGAGCAGATTGAATCTGGTGACGACGACGACGACGACATTTCATCAT
GGTTTTCTGGTGGTACTAGTAATATTAACATGAAAAAGGCATAGCCAGATTTCTGTAAAC
GCTAGTATCTGCACAATTTCATCTGTAATATTTACAGTGTAGGCATTCAGTAAGAAAAAA
TCATGTCTCGCAAAGAACTTCAGTATTGTACTTCTGCTATGATCTGTCTTGGCAAATAAT
ATACTATGATTTT