Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0708900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:28588615:28593641:1 gene:Os03g0708900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RanBP2-type domain containing protein. (Os03t0708900-01)
Sequence

ATGGCCTCCTCCTCCAAGCTCCTAGCCCTCACCCTCACCTCCTCCTTCCTCCGCTCCTCC
CTCCTGCCCGCCCCGTCCCGCCGCCTCCCCACCGGCCCACTCCTCTCCCTCCGCTTCTGC
TCCGCCGCGGGGGATGTCGCCGACGCTCCTGCCGCCGCCGCAGCACCAGATCATCCGTGG
CCCGAGTGGGGCGATTTCCTCGAGAAGCTTCGGGCCAAGGGGTACTTCGAGCAGCCCACC
CTCGCGTCTCGCGCTGATGCTGCGGAGGGGGAGGTGGCTGCGACCGCCGCGGCGGCGGCG
GCGGCGGCGGGGGAGGACCCTGGGGCCTCGGCCGACAATTACCCATCCAAGGACCTGAAC
AGGTTGAAGAACGCATGCCTCAAGTTCGGCCGAGAGCGCTTCGATCTCCTCAGTGTCCTT
CCCAAGCAGGATATCCGTGCTATTGTTGAGTGTGGCTGTCCTAACATCTTCCGGAAGCCT
GTGAATTCTGCAAAAAGACTCAGAGAGTTTCTTCAGATTGATGAAGGAGATGCCTGTAGT
GCTTGCAAATTACGTGGATCTTGTGATAAAGCCTATGTCATTCCGAACGCTGAAGACGAA
GCTCGTACTGTCGATGTTATGCGCATACTGCTAAATTATGCAATAGATCCAACCAGCCTT
TCAGGAGAAAACTCTGTTAATGGTGGTGTTCAAGAATCTGCGAGAAAGCTTCTTTCAGAG
CTTACTATGCTTAGCGACACAACAATTGATCCATCAATTCCTAAACCTGTATTCCAAACT
TCTAGCAAGACCAAAACTTTTGACAAGGGCATTGCAAAGCCTAAGTTCTCAGCTGGAAAG
GGTAGGGAAACAACTGAAACAGAAATGAAGAAGGGTGATTGGCTTTGCCCAAATTGCAAC
TTCTTAAATTTTGCTCGAAATCGGCACTGCCTTGAATGCAAAGCAGATGGACCAAAGAAG
ATAGAAACAGCTACCACTGAAATGAAAACGGGAGACTGGATCTGTCCACAGTGCCACTTC
ATGAACTTTGCACGGAATAAGATGTGTTTTAAATGTGAAGAATCTCGACCAAAGAGGCAG
CTCATCCCTGGAGAATGGGAGTGCCCCTCATGCAGCTTTGTGAACTTTCGACGCAACAAG
GTCTGCTTGAAGTGCAAGCATGAAGGCCCCGAAAATGATACCCATGACAGCCAGCACGGA
CACAATAGGTGGAGGAACACGAGAGGGGCTGACAGAAGTAGAAGTTTTGATGACTCTTTC
GATCGGGAGGACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGC
ACTAGGGCAGCATCAACCCTGGGGAGATCCACTGGCAAGAGCAAAATTTTTGACTCGATT
CATGAGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTACGAAGGGCAG
CGCAGGCATATTGTGAGCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGA
AGCGAGGATATTTGA

Peptide Sequence

PEP ID

Os03t0708900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:28588615:28593641:1 gene:Os03g0708900 transcript:Os03t0708900-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RanBP2-type domain containing protein. (Os03t0708900-01)
Sequence

MASSSKLLALTLTSSFLRSSLLPAPSRRLPTGPLLSLRFCSAAGDVADAPAAAAAPDHPW
PEWGDFLEKLRAKGYFEQPTLASRADAAEGEVAATAAAAAAAAGEDPGASADNYPSKDLN
RLKNACLKFGRERFDLLSVLPKQDIRAIVECGCPNIFRKPVNSAKRLREFLQIDEGDACS
ACKLRGSCDKAYVIPNAEDEARTVDVMRILLNYAIDPTSLSGENSVNGGVQESARKLLSE
LTMLSDTTIDPSIPKPVFQTSSKTKTFDKGIAKPKFSAGKGRETTETEMKKGDWLCPNCN
FLNFARNRHCLECKADGPKKIETATTEMKTGDWICPQCHFMNFARNKMCFKCEESRPKRQ
LIPGEWECPSCSFVNFRRNKVCLKCKHEGPENDTHDSQHGHNRWRNTRGADRSRSFDDSF
DREDDGSDPDEGERRRAKVRTRAASTLGRSTGKSKIFDSIHEDGNGREDDSEDVLPYEGQ
RRHIVSKRATPAQRRFTAGRSEDI

Transcript Sequence

Transcript ID

Os03t0708900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:28588615:28593641:1 gene:Os03g0708900 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RanBP2-type domain containing protein. (Os03t0708900-01)
Sequence

GCTCCCGCCTCCATCCCTGCTCACCTGATTCCCCGACACCATCGCACCCAGCCGCCATGG
CCTCCTCCTCCAAGCTCCTAGCCCTCACCCTCACCTCCTCCTTCCTCCGCTCCTCCCTCC
TGCCCGCCCCGTCCCGCCGCCTCCCCACCGGCCCACTCCTCTCCCTCCGCTTCTGCTCCG
CCGCGGGGGATGTCGCCGACGCTCCTGCCGCCGCCGCAGCACCAGATCATCCGTGGCCCG
AGTGGGGCGATTTCCTCGAGAAGCTTCGGGCCAAGGGGTACTTCGAGCAGCCCACCCTCG
CGTCTCGCGCTGATGCTGCGGAGGGGGAGGTGGCTGCGACCGCCGCGGCGGCGGCGGCGG
CGGCGGGGGAGGACCCTGGGGCCTCGGCCGACAATTACCCATCCAAGGACCTGAACAGGT
TGAAGAACGCATGCCTCAAGTTCGGCCGAGAGCGCTTCGATCTCCTCAGTGTCCTTCCCA
AGCAGGATATCCGTGCTATTGTTGAGTGTGGCTGTCCTAACATCTTCCGGAAGCCTGTGA
ATTCTGCAAAAAGACTCAGAGAGTTTCTTCAGATTGATGAAGGAGATGCCTGTAGTGCTT
GCAAATTACGTGGATCTTGTGATAAAGCCTATGTCATTCCGAACGCTGAAGACGAAGCTC
GTACTGTCGATGTTATGCGCATACTGCTAAATTATGCAATAGATCCAACCAGCCTTTCAG
GAGAAAACTCTGTTAATGGTGGTGTTCAAGAATCTGCGAGAAAGCTTCTTTCAGAGCTTA
CTATGCTTAGCGACACAACAATTGATCCATCAATTCCTAAACCTGTATTCCAAACTTCTA
GCAAGACCAAAACTTTTGACAAGGGCATTGCAAAGCCTAAGTTCTCAGCTGGAAAGGGTA
GGGAAACAACTGAAACAGAAATGAAGAAGGGTGATTGGCTTTGCCCAAATTGCAACTTCT
TAAATTTTGCTCGAAATCGGCACTGCCTTGAATGCAAAGCAGATGGACCAAAGAAGATAG
AAACAGCTACCACTGAAATGAAAACGGGAGACTGGATCTGTCCACAGTGCCACTTCATGA
ACTTTGCACGGAATAAGATGTGTTTTAAATGTGAAGAATCTCGACCAAAGAGGCAGCTCA
TCCCTGGAGAATGGGAGTGCCCCTCATGCAGCTTTGTGAACTTTCGACGCAACAAGGTCT
GCTTGAAGTGCAAGCATGAAGGCCCCGAAAATGATACCCATGACAGCCAGCACGGACACA
ATAGGTGGAGGAACACGAGAGGGGCTGACAGAAGTAGAAGTTTTGATGACTCTTTCGATC
GGGAGGACGATGGCTCTGATCCAGACGAAGGCGAGCGCAGACGTGCCAAAGTGCGCACTA
GGGCAGCATCAACCCTGGGGAGATCCACTGGCAAGAGCAAAATTTTTGACTCGATTCATG
AGGATGGTAACGGTAGGGAGGATGACAGCGAGGATGTCCTGCCGTACGAAGGGCAGCGCA
GGCATATTGTGAGCAAAAGGGCGACACCAGCACAGAGGAGATTCACTGCTGGTAGAAGCG
AGGATATTTGATAGTCTGATAGATATATATAACTTCGATATTTTTCCATGTAGCGTATAG
TTTCATTATGTACTGTGTACTATTTACTCGAGCACTTTATGGTTAGACTAGCTTGGTTGT
AATTCATACTGCTTAGTTCCAAATAAGTTCATTTTTT