Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0708600-02
CDS Infomation	cds chromosome:IRGSP-1.0:3:28568347:28571307:-1 gene:Os03g0708600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 21 description:DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-01);DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-02)
Sequence	ATGAAGCGCGCCGCCGACGGGATGGAGAAGCCCAAGTTCCTCACGCGGGAGGAGCGGGAG AAGCTGGCGCTCGAGCGCCGCCAGGCCGCCGTCACCGACCAGCGCCGCTCCGCCCTCGAC CTGCTCCAGTCGCTCCCCCGCCCCCCTCCGCCGCCGCCGCCTCCCCTTTCCAACCCCCCT CGCGACTCCTCCTCCTCCCACCACCGCGACTCCTCCGACCGTGACCGTGACCGTGACCGG GACCGGGATCGGGACAGGGACCGGGACCGTGACCGGGAGCGCCGCCGCGACGACGACTCC CGCCGCGACCGAGATCGGGATCGGGACCGCGACCGAGGCGACTCCTCCCGCCGCGACCGC GACAGGGAGCGCGGTGACCGCGACCGCGACCGTGACCGGGAGCGCGGGGACAGGGACAGG GAGCGAGGGGACAGGGAGAAAGATCGGCTGGAGAAGATGGCGGAGAGGGAGCGGGAGAAG GAGCTGGACGCGATCAAGGAGCAGTACCTGGGTTCCAAGAAGCCCAAGAAGCGGGTCATC AAGCCGTCTGAGAAGTTCCGCTTCTCGTTCGACTGGGAGAACACGGAGGACACCAGCCGC GACATGAACTCGCTCTACCAGTCGCCCCACGAGGCCCGCCTGCTCTACGGCCGGGGATTC CTGGCTGGCATTGATCGCCGCGAGCAGAAGAAGGTGGCCGCCGCGCATGAGAAGGAGACC CGTGCCGAGCAGCGGCGCAAGGCCGGTCTGGATGACCGCCCTGAGGACGACGCAGTTGAT AAGAAGGAGGCTGATGCTGCAGCGAAGTATGATGCCTTCGACATGCGCGTGGACAGGCAC TGGACTCAGAAGTCTCTTGATGAGATGACGGAGCGGGATTGGCGTATATTCCGTGAGGAC TTCAATATATCCTATAAGGGTTCTAAGGTACCCCGTCCCATGCGGAAGTGGTCTGAGAGC AAGCTTGGTACTGAGCTGCTTCGTGCTGTCGAGAAAGCTGGGTACAAGGAACCTTCGCCG ATTCAGATGGCTTCCATTCCACTTGGTCTCCAGCAGCGTGATGTTATTGGTATTGCTGAA ACAGGCTCTGGCAAGACTGCTGCTTTTGTGCTCCCTATGCTTTCGTACATTACCCGCCTC CCACCCATAAGTGAGGAAAATGAGGCTGAGGGTCCTTATGCTGTTGTTATGGCACCTACT CGTGAGCTTGCTCAACAGATTGAGGAAGAGACTGTGAAATTTGCGACCTATCTTGGCATT AAGGTTGTGTCTATCGTTGGTGGTCAATCCATTGAAGAGCAGGGTTTTAAGATTAGGCAG GGCTGTGAGGTTGTTATTGCAACTCCTGGTCGGCTTCTTGATTGCTTGGAGAGGAGGTAT GCTGTGCTCAACCAGTGCAACTATGTGGTTCTGGATGAGGCTGATAGGATGATTGATATG GGCTTCGAGCCGCAGGTTGTTGGAGTCCTTGATGCTATGCCATCGAGTAACTTGAAACCT GAGAATGAGGATGAGGAGCTTGATGCAAAAACGATCTATAGGACTACCTATATGTTCAGC GCCACTATGCCACCTGCTGTGGAGCGGCTTGCTAGGAAGTACCTGCGGAACCCAGTCGTT GTCACAATTGGTACAGCTGGCAAGGCCACAGATCTCATCACACAGAACGTGATCATGACG AAGGAGTCAGAGAAGATGTCAAGGCTCCAGAAGATACTCACAGATCTTGGGGATAAGCCA GCCATTGTGTTCTGCAACACAAAGAAATCAGCAGATGCTCGTGCGAAGGATCTAGACAAG GCAGGCTTCCGCGTCACAACACTACATGGTGGGAAGTCACAGGAGCAGAGAGAGACGAGC CTTGATGGATTTAGAAACCGGCGGTTCACTGTTCTTGTGGCAACTGATGTTGCCGGGCGT GGTATTGATATTCCCGATGTTGCTCATGTCATCAACTATGAGATGCCTAGTTCAATCGAT ACATACACACATCGTATTGGAAGAACTGGACGTGCAGGAAAGAAGGGATTGGCAACTTCG TTTTTAACTCTGGAGAACACTGACATTTTCTTTGATCTGAAACAGATGCTTATACAGAGC AACAGTCCTGTGCCACCTGAACTTGCAAGGCATGAAGCATCCAAATTTAAGCCAGGCTCA GTTCCTGATAGACCTCCAAGACGAAATGACACAGTCTATGCAACTCACTGA

Peptide Sequence

PEP ID	Os03t0708600-02
PEP Infomation	pep chromosome:IRGSP-1.0:3:28568347:28571307:-1 gene:Os03g0708600 transcript:Os03t0708600-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 21 description:DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-01);DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-02)
Sequence	MKRAADGMEKPKFLTREEREKLALERRQAAVTDQRRSALDLLQSLPRPPPPPPPPLSNPP RDSSSSHHRDSSDRDRDRDRDRDRDRDRDRDRERRRDDDSRRDRDRDRDRDRGDSSRRDR DRERGDRDRDRDRERGDRDRERGDREKDRLEKMAEREREKELDAIKEQYLGSKKPKKRVI KPSEKFRFSFDWENTEDTSRDMNSLYQSPHEARLLYGRGFLAGIDRREQKKVAAAHEKET RAEQRRKAGLDDRPEDDAVDKKEADAAAKYDAFDMRVDRHWTQKSLDEMTERDWRIFRED FNISYKGSKVPRPMRKWSESKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAE TGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGI KVVSIVGGQSIEEQGFKIRQGCEVVIATPGRLLDCLERRYAVLNQCNYVVLDEADRMIDM GFEPQVVGVLDAMPSSNLKPENEDEELDAKTIYRTTYMFSATMPPAVERLARKYLRNPVV VTIGTAGKATDLITQNVIMTKESEKMSRLQKILTDLGDKPAIVFCNTKKSADARAKDLDK AGFRVTTLHGGKSQEQRETSLDGFRNRRFTVLVATDVAGRGIDIPDVAHVINYEMPSSID TYTHRIGRTGRAGKKGLATSFLTLENTDIFFDLKQMLIQSNSPVPPELARHEASKFKPGS VPDRPPRRNDTVYATH

Transcript Sequence

Transcript ID	Os03t0708600-02
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:28568347:28571307:-1 gene:Os03g0708600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA helicase 21 description:DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-01);DEAD-like helicase, N-terminal domain containing protein. (Os03t0708600-02)
Sequence	TCGTCTCGTCCTCCACACAAACCCTCCCCAACTCCACGAATCCCGCCGCCGCCGCCGCCG CCATGAAGCGCGCCGCCGACGGGATGGAGAAGCCCAAGTTCCTCACGCGGGAGGAGCGGG AGAAGCTGGCGCTCGAGCGCCGCCAGGCCGCCGTCACCGACCAGCGCCGCTCCGCCCTCG ACCTGCTCCAGTCGCTCCCCCGCCCCCCTCCGCCGCCGCCGCCTCCCCTTTCCAACCCCC CTCGCGACTCCTCCTCCTCCCACCACCGCGACTCCTCCGACCGTGACCGTGACCGTGACC GGGACCGGGATCGGGACAGGGACCGGGACCGTGACCGGGAGCGCCGCCGCGACGACGACT CCCGCCGCGACCGAGATCGGGATCGGGACCGCGACCGAGGCGACTCCTCCCGCCGCGACC GCGACAGGGAGCGCGGTGACCGCGACCGCGACCGTGACCGGGAGCGCGGGGACAGGGACA GGGAGCGAGGGGACAGGGAGAAAGATCGGCTGGAGAAGATGGCGGAGAGGGAGCGGGAGA AGGAGCTGGACGCGATCAAGGAGCAGTACCTGGGTTCCAAGAAGCCCAAGAAGCGGGTCA TCAAGCCGTCTGAGAAGTTCCGCTTCTCGTTCGACTGGGAGAACACGGAGGACACCAGCC GCGACATGAACTCGCTCTACCAGTCGCCCCACGAGGCCCGCCTGCTCTACGGCCGGGGAT TCCTGGCTGGCATTGATCGCCGCGAGCAGAAGAAGGTGGCCGCCGCGCATGAGAAGGAGA CCCGTGCCGAGCAGCGGCGCAAGGCCGGTCTGGATGACCGCCCTGAGGACGACGCAGTTG ATAAGAAGGAGGCTGATGCTGCAGCGAAGTATGATGCCTTCGACATGCGCGTGGACAGGC ACTGGACTCAGAAGTCTCTTGATGAGATGACGGAGCGGGATTGGCGTATATTCCGTGAGG ACTTCAATATATCCTATAAGGGTTCTAAGGTACCCCGTCCCATGCGGAAGTGGTCTGAGA GCAAGCTTGGTACTGAGCTGCTTCGTGCTGTCGAGAAAGCTGGGTACAAGGAACCTTCGC CGATTCAGATGGCTTCCATTCCACTTGGTCTCCAGCAGCGTGATGTTATTGGTATTGCTG AAACAGGCTCTGGCAAGACTGCTGCTTTTGTGCTCCCTATGCTTTCGTACATTACCCGCC TCCCACCCATAAGTGAGGAAAATGAGGCTGAGGGTCCTTATGCTGTTGTTATGGCACCTA CTCGTGAGCTTGCTCAACAGATTGAGGAAGAGACTGTGAAATTTGCGACCTATCTTGGCA TTAAGGTTGTGTCTATCGTTGGTGGTCAATCCATTGAAGAGCAGGGTTTTAAGATTAGGC AGGGCTGTGAGGTTGTTATTGCAACTCCTGGTCGGCTTCTTGATTGCTTGGAGAGGAGGT ATGCTGTGCTCAACCAGTGCAACTATGTGGTTCTGGATGAGGCTGATAGGATGATTGATA TGGGCTTCGAGCCGCAGGTTGTTGGAGTCCTTGATGCTATGCCATCGAGTAACTTGAAAC CTGAGAATGAGGATGAGGAGCTTGATGCAAAAACGATCTATAGGACTACCTATATGTTCA GCGCCACTATGCCACCTGCTGTGGAGCGGCTTGCTAGGAAGTACCTGCGGAACCCAGTCG TTGTCACAATTGGTACAGCTGGCAAGGCCACAGATCTCATCACACAGAACGTGATCATGA CGAAGGAGTCAGAGAAGATGTCAAGGCTCCAGAAGATACTCACAGATCTTGGGGATAAGC CAGCCATTGTGTTCTGCAACACAAAGAAATCAGCAGATGCTCGTGCGAAGGATCTAGACA AGGCAGGCTTCCGCGTCACAACACTACATGGTGGGAAGTCACAGGAGCAGAGAGAGACGA GCCTTGATGGATTTAGAAACCGGCGGTTCACTGTTCTTGTGGCAACTGATGTTGCCGGGC GTGGTATTGATATTCCCGATGTTGCTCATGTCATCAACTATGAGATGCCTAGTTCAATCG ATACATACACACATCGTATTGGAAGAACTGGACGTGCAGGAAAGAAGGGATTGGCAACTT CGTTTTTAACTCTGGAGAACACTGACATTTTCTTTGATCTGAAACAGATGCTTATACAGA GCAACAGTCCTGTGCCACCTGAACTTGCAAGGCATGAAGCATCCAAATTTAAGCCAGGCT CAGTTCCTGATAGACCTCCAAGACGAAATGACACAGTCTATGCAACTCACTGAAGCATCT ACTGCAGAATGGGCCAAAGATCCTCCAGTATTACAAGGGAACTTTTGGAAACAGAAGGAT CTAATTCTAGATTAGTACTTCGAGAGGGCATATATTGTATCTGATCTTCATTGTGGAGAT TTTATGTGGTCTAGCAACATTGAATATTTGAGTCCAAAGAGGTGCTAATTTTCTTTCTTC TTTCATATGTTTTTGTACACCGTTTGGCTTGGTATTCAAAACGGAGAAATCTGTCACCTC CACCTCCTGAACTGTTAAACTGCCTAAATAACCCCTGAACTATCTAAAACCGTCTGAATA ACATACAAGGTAGTTTTGAAGGCTTGTTTTGTATGTGGCATGCAGGTGTGCACTATTATT TCTGTATAACGACTCTCGTGCTTGCTTCTCCAAAGTTTATCCTAATAAATTTTCTATACC CATA