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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0708500-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:28565482:28566757:-1 gene:Os03g0708500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FK506 binding protein 17-2 description:Capsid/spike protein, ssDNA virus domain containing protein. (Os03t0708500-00)
Sequence

ATGGCCACCTTCCTTGGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGCCAAGCCG
CACCTCTCCTGCGCGCAGTCGCCGCGCCCGCCCAGCGCCCAGCCGCCGCCGGAGCAGCAA
CCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGCGAGGCCG
AGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGCGACGTCG
CTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGCCTTCGGC
GTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAACACCAAG
GACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGAGATGCGA
GTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAAGGGGAGG
GTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCTGGCGCTG
GTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGTGCTGCGG
TCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTTCGGCGAC
GACGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCGCCCGGGGCCACGCTCGAGTAC
GTCGTGGAGGTCGACAAGGTGTCCATCGCGCCGGCGTGA

Peptide Sequence

PEP ID

Os03t0708500-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:28565482:28566757:-1 gene:Os03g0708500 transcript:Os03t0708500-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FK506 binding protein 17-2 description:Capsid/spike protein, ssDNA virus domain containing protein. (Os03t0708500-00)
Sequence

MATFLGSSPAFLARPVAAKPHLSCAQSPRPPSAQPPPEQQPPTPTPTQQQSMQAQPQARP
RRAPAAAASGADSTDWVATSLTRRFGIGAGLAWVGFLAFGVVSEQLKTRFEVAQQLANTK
DVEQEQEVVLPNGIRYYEMRVGGGDVPRPGDLVVIDLKGRVTGGEAFVDTFGDGKRPLAL
VMGSRPYTRGMCEGVEYVLRSMRAGGKRRVVVPPALGFGDDGADFGDAAAQVPPGATLEY
VVEVDKVSIAPA

Transcript Sequence

Transcript ID

Os03t0708500-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:28565482:28566757:-1 gene:Os03g0708500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FK506 binding protein 17-2 description:Capsid/spike protein, ssDNA virus domain containing protein. (Os03t0708500-00)
Sequence

CTCGTTACATTAGCCTTTGCTTTGCTTGCTCACTCTCGCCACGCCAAGAACGCACCGTGC
CACCGCCATGGCCACCTTCCTTGGGAGCTCGCCGGCCTTCCTCGCCCGCCCCGTCGCCGC
CAAGCCGCACCTCTCCTGCGCGCAGTCGCCGCGCCCGCCCAGCGCCCAGCCGCCGCCGGA
GCAGCAACCGCCGACGCCGACGCCGACGCAGCAGCAGTCCATGCAAGCCCAGCCGCAGGC
GAGGCCGAGGCGCGCGCCGGCGGCGGCGGCGTCCGGCGCGGACTCGACGGACTGGGTGGC
GACGTCGCTGACGCGGCGGTTCGGCATCGGCGCCGGGCTCGCGTGGGTCGGGTTCCTCGC
CTTCGGCGTCGTCTCCGAGCAGCTCAAGACCCGCTTCGAGGTCGCGCAGCAGCTGGCCAA
CACCAAGGACGTGGAGCAAGAGCAGGAGGTCGTCCTTCCCAACGGAATACGGTACTACGA
GATGCGAGTAGGCGGCGGCGACGTGCCGCGGCCGGGGGACCTGGTGGTGATCGACCTGAA
GGGGAGGGTGACCGGCGGCGAGGCGTTCGTGGACACGTTCGGCGACGGGAAGCGGCCGCT
GGCGCTGGTGATGGGGTCGAGGCCGTACACGAGGGGAATGTGCGAGGGGGTGGAGTACGT
GCTGCGGTCCATGAGGGCCGGCGGCAAGCGGCGGGTGGTCGTCCCGCCGGCGCTCGGCTT
CGGCGACGACGGCGCCGACTTCGGCGACGCCGCCGCGCAGGTCCCGCCCGGGGCCACGCT
CGAGTACGTCGTGGAGGTCGACAAGGTGTCCATCGCGCCGGCGTGAGCGTGATCGACGCG
ACGTGTAGACTCCGTATACGTAGCTGCTGCCTGGAGACAACCCCCTGCAGCGAAAATCTC
TCGAAAGGGTTTAAAACTTGCACAGCGATTTCATATTTTGTTTGAAAGAGAATGTTTTGA
TTTTTGGCCCTAGTTTAAGTTCTATTGTCTCTACAGCTATTTGGCCGTCGTATATCTAGC
GAGAGGATGGCCTGTTTGCTCCATTTTCAGTTAAAACTGCAGAGATTAACATATACTTTC
TGATGTTTTTTTTTC