Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0706500-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:28428504:28430438:1 gene:Os03g0706500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FINE CULM 1 description:TCP family transcription factor, Negative regulator for lateral branching (Os03t0706500-01)
Sequence

ATGCTTCCTTTCTTCGATTCCCCAAGCCCCATGGACATACCGCTTTACCAACAGCTTCAG
CTCACCCCTCCCTCTCCAAAGCCCGACCACCACCACCACCACCATTCCACCTTCTTCTAC
TACCACCACCACCCACCTCCCTCCCCTTCCTTCCCCTCCTTCCCCTCCCCCGCCGCCGCC
ACGATCGCCTCGCCGTCGCCGGCCATGCACCCCTTCATGGACTTGGAGTTGGAGCCGCAT
GGGCAGCAGCTGGCGGCGGCGGAGGAGGACGGGGCAGGCGGGCAAGGCGTCGACGCCGGG
GTGCCCTTCGGCGTCGACGGAGCGGCGGCGGCCGCGGCGGCGAGGAAGGACCGGCACAGC
AAGATAAGCACCGCCGGCGGGATGAGGGACCGGCGGATGCGGCTGTCCCTCGACGTCGCC
CGCAAGTTCTTCGCGCTCCAGGACATGCTCGGCTTCGACAAGGCCAGCAAGACGGTGCAA
TGGCTCCTCAACATGTCCAAGGCCGCCATCCGGGAGATCATGAGCGACGACGCCTCCTCC
GTCTGCGAGGAGGACGGCTCCAGCAGCCTCTCCGTCGACGGCAAGCAGCAGCAGCACAGC
AACCCGGCGGATCGGGGCGGCGGCGCCGGGGACCACAAGGGCGCCGCTCACGGCCACAGC
GACGGGAAGAAGCCGGCCAAGCCGAGAAGGGCAGCGGCCAACCCGAAGCCACCGCGGCGG
CTGGCCAATGCGCACCCCGTCCCCGACAAGGAGTCGCGCGCCAAGGCGAGGGAGCGGGCG
CGGGAGCGGACCAAGGAGAAGAACCGGATGCGGTGGGTCACCCTCGCCTCGGCAATCAGC
GTCGAGGCGGCCACCGCGGCGGCGGCCGCGGGGGAGGACAAGTCGCCGACGAGCCCCAGC
AACAACCTGAACCACTCATCGTCCACCAATCTTGTGAGCACCGAATTGGAGGACGGCTCC
TCGTCAACGCGCCACAACGGCGTCGGCGTCAGCGGCGGCCGGATGCAAGAAATCTCGGCG
GCTAGCGAGGCGAGCGACGTGATCATGGCGTTCGCCAACGGCGGCGCGTACGGCGACAGC
GGCAGCTACTACCTGCAGCAGCAGCATCAGCAGGATCAGTGGGAGCTCGGCGGCGTCGTC
TACGCCAATTCGCGGCACTACTGCTGA

Peptide Sequence

PEP ID

Os03t0706500-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:28428504:28430438:1 gene:Os03g0706500 transcript:Os03t0706500-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FINE CULM 1 description:TCP family transcription factor, Negative regulator for lateral branching (Os03t0706500-01)
Sequence

MLPFFDSPSPMDIPLYQQLQLTPPSPKPDHHHHHHSTFFYYHHHPPPSPSFPSFPSPAAA
TIASPSPAMHPFMDLELEPHGQQLAAAEEDGAGGQGVDAGVPFGVDGAAAAAAARKDRHS
KISTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNMSKAAIREIMSDDASS
VCEEDGSSSLSVDGKQQQHSNPADRGGGAGDHKGAAHGHSDGKKPAKPRRAAANPKPPRR
LANAHPVPDKESRAKARERARERTKEKNRMRWVTLASAISVEAATAAAAAGEDKSPTSPS
NNLNHSSSTNLVSTELEDGSSSTRHNGVGVSGGRMQEISAASEASDVIMAFANGGAYGDS
GSYYLQQQHQQDQWELGGVVYANSRHYC

Transcript Sequence

Transcript ID

Os03t0706500-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:28428504:28430438:1 gene:Os03g0706500 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:FINE CULM 1 description:TCP family transcription factor, Negative regulator for lateral branching (Os03t0706500-01)
Sequence

AAGATGGCAACACCCTGATCTCTAGCTTAGCTGCAGAGGGGAGAGGAACCTCACATCCAA
ACTCCTAGCTACAACTTGTACTAGCATCCTAAGCAACCAAGCACAACCAAAGCAAGCAAG
CACGAACAATTCTTTCTTCCTCTCTACCTCTAGCTGCTGCCTGCCTCCTAATCCTCCTAC
CCACCACTCCACATGAGCCCATGCTGTGTGCCTGTGTCTGTGTGTGTGTTCTACTCCTAC
CATGAGAGAAGAGACCAAGCATCAACCAAGCTAGCTAGCTCGTCCTCTCCTCGATCTCTA
CTTCTCTCTCCCACACAAGCTGAGCGCCCAGGTAGGCTGCCTGCTAGGTCTCGTGCATGG
CCGGACACATCTGATCATAGCCCACTACGGCACTATTCCCCCCTTCCGCCTCGCACGCTG
AGAGGTGGCCGGAGAGGGAGGGAGGCCAGCGAGCAGCAGTAGCAGCAGCAACGCGGCTAG
GAGTAAGGAGTCCCATCAGTAAAGCATGCTTCCTTTCTTCGATTCCCCAAGCCCCATGGA
CATACCGCTTTACCAACAGCTTCAGCTCACCCCTCCCTCTCCAAAGCCCGACCACCACCA
CCACCACCATTCCACCTTCTTCTACTACCACCACCACCCACCTCCCTCCCCTTCCTTCCC
CTCCTTCCCCTCCCCCGCCGCCGCCACGATCGCCTCGCCGTCGCCGGCCATGCACCCCTT
CATGGACTTGGAGTTGGAGCCGCATGGGCAGCAGCTGGCGGCGGCGGAGGAGGACGGGGC
AGGCGGGCAAGGCGTCGACGCCGGGGTGCCCTTCGGCGTCGACGGAGCGGCGGCGGCCGC
GGCGGCGAGGAAGGACCGGCACAGCAAGATAAGCACCGCCGGCGGGATGAGGGACCGGCG
GATGCGGCTGTCCCTCGACGTCGCCCGCAAGTTCTTCGCGCTCCAGGACATGCTCGGCTT
CGACAAGGCCAGCAAGACGGTGCAATGGCTCCTCAACATGTCCAAGGCCGCCATCCGGGA
GATCATGAGCGACGACGCCTCCTCCGTCTGCGAGGAGGACGGCTCCAGCAGCCTCTCCGT
CGACGGCAAGCAGCAGCAGCACAGCAACCCGGCGGATCGGGGCGGCGGCGCCGGGGACCA
CAAGGGCGCCGCTCACGGCCACAGCGACGGGAAGAAGCCGGCCAAGCCGAGAAGGGCAGC
GGCCAACCCGAAGCCACCGCGGCGGCTGGCCAATGCGCACCCCGTCCCCGACAAGGAGTC
GCGCGCCAAGGCGAGGGAGCGGGCGCGGGAGCGGACCAAGGAGAAGAACCGGATGCGGTG
GGTCACCCTCGCCTCGGCAATCAGCGTCGAGGCGGCCACCGCGGCGGCGGCCGCGGGGGA
GGACAAGTCGCCGACGAGCCCCAGCAACAACCTGAACCACTCATCGTCCACCAATCTTGT
GAGCACCGAATTGGAGGACGGCTCCTCGTCAACGCGCCACAACGGCGTCGGCGTCAGCGG
CGGCCGGATGCAAGAAATCTCGGCGGCTAGCGAGGCGAGCGACGTGATCATGGCGTTCGC
CAACGGCGGCGCGTACGGCGACAGCGGCAGCTACTACCTGCAGCAGCAGCATCAGCAGGA
TCAGTGGGAGCTCGGCGGCGTCGTCTACGCCAATTCGCGGCACTACTGCTGATGTGATCA
TCCATCCACACACGAACGAACGAACGAACGGTACGGCACTAAGATCGAACTCCTGCAGCT
ACATAATTATCCTTTGCTTCTCAAGAGTAATAATTCTTGACGTGTTAATTAATCCGGGTG
TGTATTAATTCCCTCTTTATTATTTTTTCTCGCGTTTATCCGGAGTTGACTGTGGTGAAG
ACGAACTTTGGTTTGGTCATCGCATGGTGTGCATTGCATATATAGCTAGCACTATCGTCT
GATCGATGATTCATC