Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0705300-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:28358127:28362611:-1 gene:Os03g0705300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 4,5 PIP kinase (Phosphatidylinositol-4-phosphate 5-kinase family protein). (Os03t0705300-01);Phosphatidylinositol-4-phosphate 5-kinase, core domain containing protein. (Os03t0705300-02)
Sequence	ATGAGGCGGGTCGCGCCGGCGATGATCGCCGCAGCTGCCGGCGGTGGCGGCGGGTACGAC GGGGAGGAGGCGGATGCGGGGGCGGCGGTGGTGGAGAAGGCGCTGCCGAATGGGGATGTG TACCGCGGCGGGTTCGCCGGGGGCGCGCCGCACGGGAAGGGGAAGTATGTGTGGGCGGAT GGGTGCATGTACGAGGGGGAATGGCGGCGGGGGAAGGCGTCCGGGAAGGGGAGGTTCTCG TGGCCGTCGGGGGCCACGTTCGAGGGGGAGTTCCGCGGCGGGCGGATCGAGGGGCAGGGC GTGTTCGTCGGCCCCGACGGCGCCACGTACCGGGGCGCGTGGGCGGCGGACCGGCGGCAC GGCGTGGGCGCCAAGAGCTACGCCAACGGGGACTACTACGAGGGGCAGTGGCGCCGCAAC CTGCAGGACGGCCACGGCCGCTACGTGTGGGCCAACGGCAACCAGTACGTCGGGGAGTGG CGCGCCGGGGTGATCTCCGGCCGTGGCGTGCTGATCTGGGCCAACGGGAGCCGCTACGAC GGCGTGTGGGAGAACGGCGTCCCGAGGGGCACCGGGGTGTTCACCTGGCCCGACGGGAGC CGCTACGTGGGTTCCTGGCCGAGGAGCTGCGTCGACATGCCGGCCATTAGCGGCACGTTC TTCCCGCCGGTCGGCGCCGGTGGCGGAGGCGCGGTGAGGAAGAGGTCCTCCGTCGAGGGA GTAGGTGACAAGGCGTCCGCCGTCCCTCGGATCTGCATCTGGGAGTCCGAGGGCGAGGCG GGGGACATCACCTGCGACATCGTGGACGCGCTCGAGGCGTCCATGCTCTACCGGGAGGCC ACGACGGTTGGAGGTGGTGTGCCGTACGTTCGCACACAGCGGAGCACCCGGCGAGTAGCC AGCGGAGGCACGTGCTGGGCGCCATCGGCGGCTGCTACACCGGAGGGCAAAAGGCCAGGG CAGACAATCTCCAAGGGGCATAAGAACTACGAGCTTATGCTGCAGCTGCAATTGGGGATA AGGCACTCAGTGGGGAAGTCTGCGGCAGTGCCAATGCGGGAGCTTTCGCCTGCAGATTTT GATCCAAAGGAGAAGTTCTGGACACGATTCCCACCTGAGGGATCAAAGGTCACACCACCA CATTCCTCTTCAGATTTCCGGTGGAAGGACTACTGCCCTATGGTGTTCAGGCACTTGAGG AAGTTGTTCTCAGTTGATCCAGCAGATTACATGATCGCGATCTGCGGGAATGATGCATTG AGAGAGCTGTCTTCACCTGGAAAAAGTGGGAGCTTCTTTTACCTTACCCAGGATGATCGT TTCATGATTAAGACAGTGAAGAAATCAGAAGTGAAGTTGCTAATTCGGATGTTACCTAGC TATTACCAACATGTAAGTCAATATCGTGACTCTCTAATTACAAGGTTCTACGGTGTCCAC TGTGTGAAGCCTCTTAATGGACAGAAGGTCCGATTTATTGTTATGGGTAATTTATTCTGC TCAGAATATCGGATTCATCGCCGTTTTGATCTAAAAGGTTCATCCTATGGACGGACAGCA GACAAATTTGATGACGAGATTGATGAGACAACCACTCTCAAGGACTTGGATCTCAACTTT GTTTTTCGATTGCAACGAACTTGGTTTAGAGATCTCCATGAGCAACTCAGGCGGGATTGT GAATTTTTGGAATCAGAAGGGATCATGGACTACAGTTTCTTAGTGGGAGTTCACTTTTGT GATGACCTCTCTGCCTCAAAGACAGGCTTATCTACTTTTACAGCTTCTCCTAAGTTTTCA ATGAAGAGGGAGTCGTTCCAAGGTGGTGGTGGCATGCCAGAGCTGTGCTTCTCAGATAGT GATTTTGATAGGATACCTGATTGCCGGAAACCATTGATTAGACTGGGGGCACACATGCCA GCACGGGCAGAGCAAGCATCCAGAAGGAGTGAGTTTGACCCATTTCTCCTTAATGGTGGG GGATTCTTGGCCCCGAATCAGACTGGTGAAGTGTATGATGTGATTCTATATTTTGGGATA ATAGACATTCTCCAGGATTATGACATCACGAAAAGGCTAGAGCATGCATACAAGTCATTA CAGACCGACCCCAATTCGATTTCTGCTGTGGATCCAAAGCTCTATTCGAAAAGATTTCAA GATTTCATTGGCAGAATTTTTGTGGAAGATGGCTAG

Peptide Sequence

PEP ID	Os03t0705300-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:28358127:28362611:-1 gene:Os03g0705300 transcript:Os03t0705300-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 4,5 PIP kinase (Phosphatidylinositol-4-phosphate 5-kinase family protein). (Os03t0705300-01);Phosphatidylinositol-4-phosphate 5-kinase, core domain containing protein. (Os03t0705300-02)
Sequence	MRRVAPAMIAAAAGGGGGYDGEEADAGAAVVEKALPNGDVYRGGFAGGAPHGKGKYVWAD GCMYEGEWRRGKASGKGRFSWPSGATFEGEFRGGRIEGQGVFVGPDGATYRGAWAADRRH GVGAKSYANGDYYEGQWRRNLQDGHGRYVWANGNQYVGEWRAGVISGRGVLIWANGSRYD GVWENGVPRGTGVFTWPDGSRYVGSWPRSCVDMPAISGTFFPPVGAGGGGAVRKRSSVEG VGDKASAVPRICIWESEGEAGDITCDIVDALEASMLYREATTVGGGVPYVRTQRSTRRVA SGGTCWAPSAAATPEGKRPGQTISKGHKNYELMLQLQLGIRHSVGKSAAVPMRELSPADF DPKEKFWTRFPPEGSKVTPPHSSSDFRWKDYCPMVFRHLRKLFSVDPADYMIAICGNDAL RELSSPGKSGSFFYLTQDDRFMIKTVKKSEVKLLIRMLPSYYQHVSQYRDSLITRFYGVH CVKPLNGQKVRFIVMGNLFCSEYRIHRRFDLKGSSYGRTADKFDDEIDETTTLKDLDLNF VFRLQRTWFRDLHEQLRRDCEFLESEGIMDYSFLVGVHFCDDLSASKTGLSTFTASPKFS MKRESFQGGGGMPELCFSDSDFDRIPDCRKPLIRLGAHMPARAEQASRRSEFDPFLLNGG GFLAPNQTGEVYDVILYFGIIDILQDYDITKRLEHAYKSLQTDPNSISAVDPKLYSKRFQ DFIGRIFVEDG

Transcript Sequence

Transcript ID	Os03t0705300-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:28358127:28362611:-1 gene:Os03g0705300 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 4,5 PIP kinase (Phosphatidylinositol-4-phosphate 5-kinase family protein). (Os03t0705300-01);Phosphatidylinositol-4-phosphate 5-kinase, core domain containing protein. (Os03t0705300-02)
Sequence	CTAGACCAAGTAGTACCACCACTTCGTAGCCCAAATCAAACGACCCGGTGTTTGTAGCCG AGAGAGAGAAAAAAAATTGAGAGGAAAAGGGGAAGAGAGGTGGAGAAAAGCTTCGGAGTG GGGAAGGGAAGCATAAATCCCGAGCACCAAATCGCAAACCCTAGCGCCTCCCGATCTGCA ATGCCTGGGGCGTGAGGGGGTAGGTGATTGTGCCCGCAGATGAGGCGGGTCGCGCCGGCG ATGATCGCCGCAGCTGCCGGCGGTGGCGGCGGGTACGACGGGGAGGAGGCGGATGCGGGG GCGGCGGTGGTGGAGAAGGCGCTGCCGAATGGGGATGTGTACCGCGGCGGGTTCGCCGGG GGCGCGCCGCACGGGAAGGGGAAGTATGTGTGGGCGGATGGGTGCATGTACGAGGGGGAA TGGCGGCGGGGGAAGGCGTCCGGGAAGGGGAGGTTCTCGTGGCCGTCGGGGGCCACGTTC GAGGGGGAGTTCCGCGGCGGGCGGATCGAGGGGCAGGGCGTGTTCGTCGGCCCCGACGGC GCCACGTACCGGGGCGCGTGGGCGGCGGACCGGCGGCACGGCGTGGGCGCCAAGAGCTAC GCCAACGGGGACTACTACGAGGGGCAGTGGCGCCGCAACCTGCAGGACGGCCACGGCCGC TACGTGTGGGCCAACGGCAACCAGTACGTCGGGGAGTGGCGCGCCGGGGTGATCTCCGGC CGTGGCGTGCTGATCTGGGCCAACGGGAGCCGCTACGACGGCGTGTGGGAGAACGGCGTC CCGAGGGGCACCGGGGTGTTCACCTGGCCCGACGGGAGCCGCTACGTGGGTTCCTGGCCG AGGAGCTGCGTCGACATGCCGGCCATTAGCGGCACGTTCTTCCCGCCGGTCGGCGCCGGT GGCGGAGGCGCGGTGAGGAAGAGGTCCTCCGTCGAGGGAGTAGGTGACAAGGCGTCCGCC GTCCCTCGGATCTGCATCTGGGAGTCCGAGGGCGAGGCGGGGGACATCACCTGCGACATC GTGGACGCGCTCGAGGCGTCCATGCTCTACCGGGAGGCCACGACGGTTGGAGGTGGTGTG CCGTACGTTCGCACACAGCGGAGCACCCGGCGAGTAGCCAGCGGAGGCACGTGCTGGGCG CCATCGGCGGCTGCTACACCGGAGGGCAAAAGGCCAGGGCAGACAATCTCCAAGGGGCAT AAGAACTACGAGCTTATGCTGCAGCTGCAATTGGGGATAAGGCACTCAGTGGGGAAGTCT GCGGCAGTGCCAATGCGGGAGCTTTCGCCTGCAGATTTTGATCCAAAGGAGAAGTTCTGG ACACGATTCCCACCTGAGGGATCAAAGGTCACACCACCACATTCCTCTTCAGATTTCCGG TGGAAGGACTACTGCCCTATGGTGTTCAGGCACTTGAGGAAGTTGTTCTCAGTTGATCCA GCAGATTACATGATCGCGATCTGCGGGAATGATGCATTGAGAGAGCTGTCTTCACCTGGA AAAAGTGGGAGCTTCTTTTACCTTACCCAGGATGATCGTTTCATGATTAAGACAGTGAAG AAATCAGAAGTGAAGTTGCTAATTCGGATGTTACCTAGCTATTACCAACATGTAAGTCAA TATCGTGACTCTCTAATTACAAGGTTCTACGGTGTCCACTGTGTGAAGCCTCTTAATGGA CAGAAGGTCCGATTTATTGTTATGGGTAATTTATTCTGCTCAGAATATCGGATTCATCGC CGTTTTGATCTAAAAGGTTCATCCTATGGACGGACAGCAGACAAATTTGATGACGAGATT GATGAGACAACCACTCTCAAGGACTTGGATCTCAACTTTGTTTTTCGATTGCAACGAACT TGGTTTAGAGATCTCCATGAGCAACTCAGGCGGGATTGTGAATTTTTGGAATCAGAAGGG ATCATGGACTACAGTTTCTTAGTGGGAGTTCACTTTTGTGATGACCTCTCTGCCTCAAAG ACAGGCTTATCTACTTTTACAGCTTCTCCTAAGTTTTCAATGAAGAGGGAGTCGTTCCAA GGTGGTGGTGGCATGCCAGAGCTGTGCTTCTCAGATAGTGATTTTGATAGGATACCTGAT TGCCGGAAACCATTGATTAGACTGGGGGCACACATGCCAGCACGGGCAGAGCAAGCATCC AGAAGGAGTGAGTTTGACCCATTTCTCCTTAATGGTGGGGGATTCTTGGCCCCGAATCAG ACTGGTGAAGTGTATGATGTGATTCTATATTTTGGGATAATAGACATTCTCCAGGATTAT GACATCACGAAAAGGCTAGAGCATGCATACAAGTCATTACAGACCGACCCCAATTCGATT TCTGCTGTGGATCCAAAGCTCTATTCGAAAAGATTTCAAGATTTCATTGGCAGAATTTTT GTGGAAGATGGCTAGAAATGGATCAAAGGTGCACTGTAAATTCCATTCAAAGGCCAGAGC ACCGGCAATGATTTGAAGATGGTTTTGGTAGGTTTCTGTGCACGGTAAAGAATATCCATT ATCACGAACGATCATCTTCATCTACTGGGATCCGTTAAAGCGGCTCATCGGCCACCGGTA AAGCCTCAACCCAGGAGCACAGGTAATCGGGTTTGCAAAGCGGTTTGATGCAAATTCGTT GCAAGAACTGGAATGGCTGGATTTTCAGAGGCAGCCACGACAGAGGCATCTGTAAATTTT GTGATTTGGTGGGTGACAGATTGGTACTTCCAGTTCCCTAGTAGTTCTTTCTTTCTTTTC TTTTTTTTCCTTTTGTTAGGGATTCCTTACGGCTTCAGTTTTCCCCCTTTTATATATCTG TTGGATGTAGAAGGGGACAGGGAAATTTTTGTTTCCAGAAAGAGGATTTAAGGCTGTAGC AAGCAGTGAATAATGAAGATCATGTACAGATACACTTCGATCCAGAGAATGGGTGGATTA TAATTTAATTCAGCATCT