Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0694900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:27826866:27834384:1 gene:Os03g0694900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VAL-TRNA SYNTHETASE 1 description:Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS). (Os03t0694900-01)
Sequence

ATGTCCAGCGTTACCCCTGCTGCCGACGCGCAGCCACTCGATGAGAAAGAGCTGGAGCGG
AAGCTGAAGAAAGATCAGAAGGCAAAAGAGAAAGAGGAAAAAAGGCTTAAGGCGAAGGCA
AAGGAGGCGGCTAGGCTCCAGGCACAAGCAGCTTCAGATGGACCTAAGAAAAGCGAGAAG
AAGCAAAGGAAGAAAGCTGTGGAGGATGAGAATCCTGAGGATTTCATTGATCCAGACACT
CCTCATGGGCAGAAGAAATTTCTTGCATCTCAAATGGCCAAGCAGTATAGCCCAACTGCT
GTTGAGAAATCATGGTATTCCTGGTGGGAATCATCAGGATATTTTGGGGCAGATGCTGCA
AGCTCAAAGCCACCATTTGTTATAGTTTTGCCACCTCCAAATGTCACTGGAGCGCTTCAT
ATAGGCCATGCACTTACGGTGGCTATAGAGGATTCCATGATACGCTGGCGGAGGATGTCA
GGTTATAACACTCTGTGGGTTCCAGGAGTTGACCATGCAGGAATCGCTACTCAGGTTGTA
GTGGAGAAGAAGCTTATGCGTGAAAGGAATTTGACAAGGCATGACATAGGGCGTGAAGAA
TTTGTATCTGAAGTTCTCAAATGGAAAGATGAATACGGGGGTACCATATTGAATCAATTG
CGTAGGCTTGGGGCCTCACTTGATTGGTCCCGCGAGTGTTTTACAATGGATAAACCAAGA
TCAAAGGCTGTAACTGAAGCTTTTGTCAGGTTGTACAAACAAGGCCTGATATATAGGGAT
TATCGCCTCGTGAATTGGGATTGCACCCTTCGAACAGCAATTTCTGACGTAGAGGTTGAT
TATCTAGAGATTAAAGAGGAAACTATGTTAAAGGTTCCTGGTTATAATACAACTGTACAA
TTCGGTGTGTTGATCTCTTTTGCATATCCACTTGAGGAAGGATTGGGTGAGATTATTGTC
GCAACAACAAGAATCGAAACAATGCTTGGGGATACAGCCATTGCTGTTCACCCTGAGGAT
GGCAGATACAAGCATCTGCATGGTAGGTATGCAATCCATCCCTTCAATGGCCGAAAGCTC
AAAATAATCTGTGATGCTGAGTTAGTGGATCCCACTTTCGGTACTGGGGCTGTCAAGATT
ACACCTGCCCATGATCCAAATGATTTTGAGGTTGGAAAGCGACACAACCTTGAGTTCATC
AATATCTTCACAGATGATGGAAAAATAAACAACAATGGAGGTGCACAATTTGTAGGAATT
CCAAGATTTACTGCTCGAGTTGCTGTTATTGAGGCACTGAAGGCAAAGGGCTTGTACAAG
GAGACAAAGAAGAACGAAATGAGTTTGGGTGTTTGTTCAAGAACTAATGATGTGGTGGAG
CCTATGATAAAACCCCAATGGTTTGTTAATTGCAATACCATGGCACAAGCAGGTATTGAT
GCTGTAAGGTCCAAAAGAATTGAGATTATTCCACAACAGTATGAGCAAGACTGGTATAGA
TGGCTTGCAAATATACGTGATTGGTGTATTTCGAGGCAGCTTTGGTGGGGACATCGCGTT
CCTGCTTGGTATGTTATACTAGAAGATGATCAAGAGAAAATTCTGGGTTCTGCTAATGGC
CGTTGGATTGTTGCTAGAAACGAAAGTGAAGCAAACCTGGAGGCACAGCAAAAGTATCCT
GGGAAGAAATTCGAGTTACATCAAGATCCTGATGTGTTGGATACATGGTTTTCATCTGGT
CTCTTCCCATTAACCGTACTTGGTTGGCCAGATGATACAGCTGACCTTAAAGCTTTCTAC
CCTGGTTCGGTGCTAGAAACTGGACATGACATTATCTTCTTTTGGGTAGCACGGATGGTG
ATGATGGGGATGCAACTTGGTGGCGATGTGCCATTTGAGAAGGTTTATTTGCACCCTATG
ATACGTGATGCTCATGGACGCAAAATGTCCAAGTCGCTTGGTAATGTCATTGATCCCGTT
GATGTGATAAATGGCATTTCACTGGATGGTCTCCTCAAACGTTTGAAAGAAGGCAATCTA
GATCCAAATGAATTGAACATTGCAACAGAAGGGAAGAAGAAGGATTTTCCTGATGGCATT
GCTGAATGTGGTACCGATGCTCTCCGTTTTGCACTGGTTTCTTACACTTCGCAGTCTGAC
AAGATAAACCTGGATATCAAACGAGTTGTTGGATATCGACAGTGGTGCAATAAATTATGG
AATGCCATTCGTTTTGCAATGGGCAAGCTTGGCAATCATTACACTCCCCCTGCAACTATT
TCTGTAACTACAATGCCACCCATATGCAAATGGATATTGTCAGTACTTAATAAAGCTATT
GGCAAAACTGTCACCTCGTTAGAAGCATACAAATTTTCTGATGCTACATCTGCTATATAC
TCGTGGTGGCAGTACCAACTATGTGATGTGTTCATAGAAGCTATAAAGCCTTACTTCTTC
AATGACTCTCAAGAGTTTGAATCAGCAAGAGCTGCCTCTAGAGATGCCTTATGGGTTTGC
TTAGACACTGGTTTGCGCTTGCTCCACCCATTCATGCCTTATGTTACAGAAGAGCTCTGG
CAGCGTCTTCCTCAGCCTAAAGATTCTTGTCGGAAAGATTCCATTATGGTATCAGAGTAC
CCATCTGTTGTTAAGGAATGGACGGATGATAAACTTGAAAATGAGATAGATATTGCCTTA
GATACTATCAACAAACTAAGATCTCTGAAGCCACCATCTGATACAAATGAGAGACGACCT
GCTTTTGCACTTTGCCGAGGCCAAGAGATTACTGCCACCATTCAGTGTTATCAGTCTCTA
GTTGTGTCTCTTTCTTCCACATCATCTCTAAAGATCCTGACAGAGAATGATGAAACGCCA
CCTGACTGTGCAACAGCTGTTGTAAACAAAGATTTGTCTGTATACCTTCAACTCCAAGGA
GCTCTCAATGCAGAAGTTGAGCTTGAAAAGCTGAGGAAAAAGAGAGAAGAAATTCAAAAG
CTCCAACACGCACTGTCACAGAAAATGGAAGCTTCTGGTTACAAAGAGAAGGCTCCACAG
AATGTCCAGGAGGAGGACATGAGAAAACTCACTAGTTTTTTTGAACAGCTAGAGATTATC
AGTGAAGCTGAAAAGAAGCTAGATGCAAAAACTGGCAATAATTGA

Peptide Sequence

PEP ID

Os03t0694900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:27826866:27834384:1 gene:Os03g0694900 transcript:Os03t0694900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VAL-TRNA SYNTHETASE 1 description:Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS). (Os03t0694900-01)
Sequence

MSSVTPAADAQPLDEKELERKLKKDQKAKEKEEKRLKAKAKEAARLQAQAASDGPKKSEK
KQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPTAVEKSWYSWWESSGYFGADAA
SSKPPFVIVLPPPNVTGALHIGHALTVAIEDSMIRWRRMSGYNTLWVPGVDHAGIATQVV
VEKKLMRERNLTRHDIGREEFVSEVLKWKDEYGGTILNQLRRLGASLDWSRECFTMDKPR
SKAVTEAFVRLYKQGLIYRDYRLVNWDCTLRTAISDVEVDYLEIKEETMLKVPGYNTTVQ
FGVLISFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPEDGRYKHLHGRYAIHPFNGRKL
KIICDAELVDPTFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINNNGGAQFVGI
PRFTARVAVIEALKAKGLYKETKKNEMSLGVCSRTNDVVEPMIKPQWFVNCNTMAQAGID
AVRSKRIEIIPQQYEQDWYRWLANIRDWCISRQLWWGHRVPAWYVILEDDQEKILGSANG
RWIVARNESEANLEAQQKYPGKKFELHQDPDVLDTWFSSGLFPLTVLGWPDDTADLKAFY
PGSVLETGHDIIFFWVARMVMMGMQLGGDVPFEKVYLHPMIRDAHGRKMSKSLGNVIDPV
DVINGISLDGLLKRLKEGNLDPNELNIATEGKKKDFPDGIAECGTDALRFALVSYTSQSD
KINLDIKRVVGYRQWCNKLWNAIRFAMGKLGNHYTPPATISVTTMPPICKWILSVLNKAI
GKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNDSQEFESARAASRDALWVC
LDTGLRLLHPFMPYVTEELWQRLPQPKDSCRKDSIMVSEYPSVVKEWTDDKLENEIDIAL
DTINKLRSLKPPSDTNERRPAFALCRGQEITATIQCYQSLVVSLSSTSSLKILTENDETP
PDCATAVVNKDLSVYLQLQGALNAEVELEKLRKKREEIQKLQHALSQKMEASGYKEKAPQ
NVQEEDMRKLTSFFEQLEIISEAEKKLDAKTGNN

Transcript Sequence

Transcript ID

Os03t0694900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:27826866:27834384:1 gene:Os03g0694900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VAL-TRNA SYNTHETASE 1 description:Similar to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS). (Os03t0694900-01)
Sequence

ACACGTTCGCTCTTACCCCAAAACCCTTCGCCCTCTTGCTGCTGCGCCGCCGCCGCACGC
GATTCCTCCTGCTCCCGTCGGCGGAAGCTAATCCCCCACCATCGCCTGCCTGCCGCGTGC
GCCGATCTCCATCCTTGAGCAGCAGCGCGCGGGCGTCCTGCTGCTTCCGCCGCATCCTCG
CTCTCCGTTTGGGGTTGTTCAAGTGAAGCACCATGTCCAGCGTTACCCCTGCTGCCGACG
CGCAGCCACTCGATGAGAAAGAGCTGGAGCGGAAGCTGAAGAAAGATCAGAAGGCAAAAG
AGAAAGAGGAAAAAAGGCTTAAGGCGAAGGCAAAGGAGGCGGCTAGGCTCCAGGCACAAG
CAGCTTCAGATGGACCTAAGAAAAGCGAGAAGAAGCAAAGGAAGAAAGCTGTGGAGGATG
AGAATCCTGAGGATTTCATTGATCCAGACACTCCTCATGGGCAGAAGAAATTTCTTGCAT
CTCAAATGGCCAAGCAGTATAGCCCAACTGCTGTTGAGAAATCATGGTATTCCTGGTGGG
AATCATCAGGATATTTTGGGGCAGATGCTGCAAGCTCAAAGCCACCATTTGTTATAGTTT
TGCCACCTCCAAATGTCACTGGAGCGCTTCATATAGGCCATGCACTTACGGTGGCTATAG
AGGATTCCATGATACGCTGGCGGAGGATGTCAGGTTATAACACTCTGTGGGTTCCAGGAG
TTGACCATGCAGGAATCGCTACTCAGGTTGTAGTGGAGAAGAAGCTTATGCGTGAAAGGA
ATTTGACAAGGCATGACATAGGGCGTGAAGAATTTGTATCTGAAGTTCTCAAATGGAAAG
ATGAATACGGGGGTACCATATTGAATCAATTGCGTAGGCTTGGGGCCTCACTTGATTGGT
CCCGCGAGTGTTTTACAATGGATAAACCAAGATCAAAGGCTGTAACTGAAGCTTTTGTCA
GGTTGTACAAACAAGGCCTGATATATAGGGATTATCGCCTCGTGAATTGGGATTGCACCC
TTCGAACAGCAATTTCTGACGTAGAGGTTGATTATCTAGAGATTAAAGAGGAAACTATGT
TAAAGGTTCCTGGTTATAATACAACTGTACAATTCGGTGTGTTGATCTCTTTTGCATATC
CACTTGAGGAAGGATTGGGTGAGATTATTGTCGCAACAACAAGAATCGAAACAATGCTTG
GGGATACAGCCATTGCTGTTCACCCTGAGGATGGCAGATACAAGCATCTGCATGGTAGGT
ATGCAATCCATCCCTTCAATGGCCGAAAGCTCAAAATAATCTGTGATGCTGAGTTAGTGG
ATCCCACTTTCGGTACTGGGGCTGTCAAGATTACACCTGCCCATGATCCAAATGATTTTG
AGGTTGGAAAGCGACACAACCTTGAGTTCATCAATATCTTCACAGATGATGGAAAAATAA
ACAACAATGGAGGTGCACAATTTGTAGGAATTCCAAGATTTACTGCTCGAGTTGCTGTTA
TTGAGGCACTGAAGGCAAAGGGCTTGTACAAGGAGACAAAGAAGAACGAAATGAGTTTGG
GTGTTTGTTCAAGAACTAATGATGTGGTGGAGCCTATGATAAAACCCCAATGGTTTGTTA
ATTGCAATACCATGGCACAAGCAGGTATTGATGCTGTAAGGTCCAAAAGAATTGAGATTA
TTCCACAACAGTATGAGCAAGACTGGTATAGATGGCTTGCAAATATACGTGATTGGTGTA
TTTCGAGGCAGCTTTGGTGGGGACATCGCGTTCCTGCTTGGTATGTTATACTAGAAGATG
ATCAAGAGAAAATTCTGGGTTCTGCTAATGGCCGTTGGATTGTTGCTAGAAACGAAAGTG
AAGCAAACCTGGAGGCACAGCAAAAGTATCCTGGGAAGAAATTCGAGTTACATCAAGATC
CTGATGTGTTGGATACATGGTTTTCATCTGGTCTCTTCCCATTAACCGTACTTGGTTGGC
CAGATGATACAGCTGACCTTAAAGCTTTCTACCCTGGTTCGGTGCTAGAAACTGGACATG
ACATTATCTTCTTTTGGGTAGCACGGATGGTGATGATGGGGATGCAACTTGGTGGCGATG
TGCCATTTGAGAAGGTTTATTTGCACCCTATGATACGTGATGCTCATGGACGCAAAATGT
CCAAGTCGCTTGGTAATGTCATTGATCCCGTTGATGTGATAAATGGCATTTCACTGGATG
GTCTCCTCAAACGTTTGAAAGAAGGCAATCTAGATCCAAATGAATTGAACATTGCAACAG
AAGGGAAGAAGAAGGATTTTCCTGATGGCATTGCTGAATGTGGTACCGATGCTCTCCGTT
TTGCACTGGTTTCTTACACTTCGCAGTCTGACAAGATAAACCTGGATATCAAACGAGTTG
TTGGATATCGACAGTGGTGCAATAAATTATGGAATGCCATTCGTTTTGCAATGGGCAAGC
TTGGCAATCATTACACTCCCCCTGCAACTATTTCTGTAACTACAATGCCACCCATATGCA
AATGGATATTGTCAGTACTTAATAAAGCTATTGGCAAAACTGTCACCTCGTTAGAAGCAT
ACAAATTTTCTGATGCTACATCTGCTATATACTCGTGGTGGCAGTACCAACTATGTGATG
TGTTCATAGAAGCTATAAAGCCTTACTTCTTCAATGACTCTCAAGAGTTTGAATCAGCAA
GAGCTGCCTCTAGAGATGCCTTATGGGTTTGCTTAGACACTGGTTTGCGCTTGCTCCACC
CATTCATGCCTTATGTTACAGAAGAGCTCTGGCAGCGTCTTCCTCAGCCTAAAGATTCTT
GTCGGAAAGATTCCATTATGGTATCAGAGTACCCATCTGTTGTTAAGGAATGGACGGATG
ATAAACTTGAAAATGAGATAGATATTGCCTTAGATACTATCAACAAACTAAGATCTCTGA
AGCCACCATCTGATACAAATGAGAGACGACCTGCTTTTGCACTTTGCCGAGGCCAAGAGA
TTACTGCCACCATTCAGTGTTATCAGTCTCTAGTTGTGTCTCTTTCTTCCACATCATCTC
TAAAGATCCTGACAGAGAATGATGAAACGCCACCTGACTGTGCAACAGCTGTTGTAAACA
AAGATTTGTCTGTATACCTTCAACTCCAAGGAGCTCTCAATGCAGAAGTTGAGCTTGAAA
AGCTGAGGAAAAAGAGAGAAGAAATTCAAAAGCTCCAACACGCACTGTCACAGAAAATGG
AAGCTTCTGGTTACAAAGAGAAGGCTCCACAGAATGTCCAGGAGGAGGACATGAGAAAAC
TCACTAGTTTTTTTGAACAGCTAGAGATTATCAGTGAAGCTGAAAAGAAGCTAGATGCAA
AAACTGGCAATAATTGACCCAGAAATCTCTGATGTGATTTTGAAGATGCACATTTGTTGA
AGTTTATCTCAAATTTTTTGCATGGTTACCTTAATCATACCTGAATGCCCAGGTACTCAT
TTTTATATTTTGTAGCTTGAAGAGTATATTCACAGCATTATACTTTTGTAGTTTTTGGTT
GTCCAATCTTCCGTTTGAAAATATTTTTTGTGGTGTTGATTTTTCTT