Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0691800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:27669017:27674441:1 gene:Os03g0691800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HIPL1 protein precursor. (Os03t0691800-01)
Sequence

ATGGCGAACAGCAAGAGCCTGCTCCTCTGCTGGTGCTCGCTCCTCCTCCTCCTCCTCGCC
GCCGCAGCGCCGCCCGCCCTCGCCCTCCCGCTCTGCACCGACTCCAGGGCGCCGGTGCCG
CTGAACGGGACGACGCTGGGCTTCTGCGGCGGCGGGGGGAGCGGGAGCAGCAGCTGCTGC
GGCGCCGCGGATGATGCCGCGCTGAGGAAGCGGTTCGAGGCGATGAACGTCTCCGACGCC
GCGTGCGCCGGGGTCGTCAAGTCCGTCCTCTGCGCGAAATGTAATCCATATTCGGCTGAG
TTGTTCAACTCAAGCTCAAAGATTCGGATGGTTCCCGTCCTGTGCAATGGATCAGCTTCA
GCTAGTTCTACTCAATCGAAGGATTCTACACAAGACTACTGCAAACTAGTTTGGGAAACA
TGCAAGAATGTGACAATACTGAATTCTCCTTTTCAATCTCCTTTGCAAGGTGGTGCAACA
TTACCTAGTTCATCATCAAAACTTACTGATGTTTGGCAGTCAGAAAATGACTTTTGTACA
TCATTTGGTGGCTCATCTGACAACCAGTCAGTATGCTTAAATGGAAATGAAGTTTCATTT
AGCACTTCAGAACCATCACCCAGTCCTAAAGGGGTGTGTATTGAGAGAATTGGAAACGGG
ACATACTTGAACATGGCTCCTCATCCGGATGGATCCAACAGAGTTTTCTTGTCTAGCCAA
GCAGGTAAAATATGGTTGGCAACTGTCCCAGAACAAGGCTCTGGAGGCATTCTGCAATTT
GATGAAGCCAGCCCATTTATTGATCTAACTGATGAAGTCCACTTTGATTCTGAGTTTGGA
CTCATGGGTATAGCATTTCACCCAAAGTTTGCTACCAATGGGCGCTTCTTTGTTTCTTAT
AATTGTGACAGAACTCAGTCATCTAACTGTGCTGGTAGGTGTTCATGTAATTCTGATGTT
AACTGTGATCCTTCAAAGCTTGGATCTGATAATGGTGCCCAGCCATGCCAGTACCAAGTT
GTTGTTGCAGAGTACTCTGCGAAAGTCTCATCATCAAATGTTTCGGAGGCAACATCTGCT
AATCCATCCGAGGTTAGAAGGATATTTACAATGGGACTGCCATATACAGCCCACCATGGG
GGACAGATACTTTTTGGACCTACAGATGGATATCTGTACCTTATGATGGGTGATGGTGGA
AACAAAGGCGACCCTTTTAATTTTTCTCAAAATAAGAGATCACTTTTGGGGAAAATTATG
AGGCTTGATGTTGATGGCGTTCAAAGCCAGAGTCAAATCATTAACCAGAGCTTGTGGGGT
AATTATTCTGTTCCTAAAGACAACCCATTCAGTGACGACCGAGACTTACAACCAGAGATT
TGGGCCTTGGGCTTGAGGAACCCATGGAGATGTAATTTTGATTCTGAGAGGCCTTCCTAT
TTCTACTGTGCAGATGTTGGGCAGGATTTATATGAAGAGGTAGATTTGATCTCGAAGGGT
GGAAACTATGGATGGCGTGCATATGAGGGCCCATACATTTATCATCCAGAATGGACTCCT
GGAGGGAATACATCGCTTAATTCTATAAATGCCATCTTCCCTGTTATGGGCTACAGCCAT
TCTGCTATCAACAAGAACACTGGGTCTGCATCAATTACAGGTGGATTTGTTTATCGAGGG
TCTTCTGATCCCTGCCTATATGGAAGGTACATATATGCTGATCTTTACGCGTCAGCAATG
TGGACCGGCACAGAGACCCCAGAGAGCAGCGGAAACTACACCTCAACTCTGATTCCGTTC
AGCTGCTCCAAGAACTCTCCAATACCCTGCGAATCTGCATCAGGCAGCAACCAACCATCG
TTGGGCTACATTTTCTCCTTCGGCGAGGACAACAACAAGGATGTCTTCCTTCTAACATAC
AAAGGCGTCTACCGAGTTGTCCGGCCTAGCCTCTGCGGCTACACCTGTGCCGCGGAGAAA
CCAGAGACCAACAACAATGGAACGTCTCCCTCAGGCTCTTCATCATTTGCTTCAGGAAGG
AGGATAGGGAAGTTGGCAGTAGTAATGGCGTTTGTTTTGTGTGCATTATTCTTCTGA

Peptide Sequence

PEP ID

Os03t0691800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:27669017:27674441:1 gene:Os03g0691800 transcript:Os03t0691800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HIPL1 protein precursor. (Os03t0691800-01)
Sequence

MANSKSLLLCWCSLLLLLLAAAAPPALALPLCTDSRAPVPLNGTTLGFCGGGGSGSSSCC
GAADDAALRKRFEAMNVSDAACAGVVKSVLCAKCNPYSAELFNSSSKIRMVPVLCNGSAS
ASSTQSKDSTQDYCKLVWETCKNVTILNSPFQSPLQGGATLPSSSSKLTDVWQSENDFCT
SFGGSSDNQSVCLNGNEVSFSTSEPSPSPKGVCIERIGNGTYLNMAPHPDGSNRVFLSSQ
AGKIWLATVPEQGSGGILQFDEASPFIDLTDEVHFDSEFGLMGIAFHPKFATNGRFFVSY
NCDRTQSSNCAGRCSCNSDVNCDPSKLGSDNGAQPCQYQVVVAEYSAKVSSSNVSEATSA
NPSEVRRIFTMGLPYTAHHGGQILFGPTDGYLYLMMGDGGNKGDPFNFSQNKRSLLGKIM
RLDVDGVQSQSQIINQSLWGNYSVPKDNPFSDDRDLQPEIWALGLRNPWRCNFDSERPSY
FYCADVGQDLYEEVDLISKGGNYGWRAYEGPYIYHPEWTPGGNTSLNSINAIFPVMGYSH
SAINKNTGSASITGGFVYRGSSDPCLYGRYIYADLYASAMWTGTETPESSGNYTSTLIPF
SCSKNSPIPCESASGSNQPSLGYIFSFGEDNNKDVFLLTYKGVYRVVRPSLCGYTCAAEK
PETNNNGTSPSGSSSFASGRRIGKLAVVMAFVLCALFF

Transcript Sequence

Transcript ID

Os03t0691800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:27669017:27674441:1 gene:Os03g0691800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to HIPL1 protein precursor. (Os03t0691800-01)
Sequence

AGACCCCTCCACGGCGACGGCCATGGCGAACAGCAAGAGCCTGCTCCTCTGCTGGTGCTC
GCTCCTCCTCCTCCTCCTCGCCGCCGCAGCGCCGCCCGCCCTCGCCCTCCCGCTCTGCAC
CGACTCCAGGGCGCCGGTGCCGCTGAACGGGACGACGCTGGGCTTCTGCGGCGGCGGGGG
GAGCGGGAGCAGCAGCTGCTGCGGCGCCGCGGATGATGCCGCGCTGAGGAAGCGGTTCGA
GGCGATGAACGTCTCCGACGCCGCGTGCGCCGGGGTCGTCAAGTCCGTCCTCTGCGCGAA
ATGTAATCCATATTCGGCTGAGTTGTTCAACTCAAGCTCAAAGATTCGGATGGTTCCCGT
CCTGTGCAATGGATCAGCTTCAGCTAGTTCTACTCAATCGAAGGATTCTACACAAGACTA
CTGCAAACTAGTTTGGGAAACATGCAAGAATGTGACAATACTGAATTCTCCTTTTCAATC
TCCTTTGCAAGGTGGTGCAACATTACCTAGTTCATCATCAAAACTTACTGATGTTTGGCA
GTCAGAAAATGACTTTTGTACATCATTTGGTGGCTCATCTGACAACCAGTCAGTATGCTT
AAATGGAAATGAAGTTTCATTTAGCACTTCAGAACCATCACCCAGTCCTAAAGGGGTGTG
TATTGAGAGAATTGGAAACGGGACATACTTGAACATGGCTCCTCATCCGGATGGATCCAA
CAGAGTTTTCTTGTCTAGCCAAGCAGGTAAAATATGGTTGGCAACTGTCCCAGAACAAGG
CTCTGGAGGCATTCTGCAATTTGATGAAGCCAGCCCATTTATTGATCTAACTGATGAAGT
CCACTTTGATTCTGAGTTTGGACTCATGGGTATAGCATTTCACCCAAAGTTTGCTACCAA
TGGGCGCTTCTTTGTTTCTTATAATTGTGACAGAACTCAGTCATCTAACTGTGCTGGTAG
GTGTTCATGTAATTCTGATGTTAACTGTGATCCTTCAAAGCTTGGATCTGATAATGGTGC
CCAGCCATGCCAGTACCAAGTTGTTGTTGCAGAGTACTCTGCGAAAGTCTCATCATCAAA
TGTTTCGGAGGCAACATCTGCTAATCCATCCGAGGTTAGAAGGATATTTACAATGGGACT
GCCATATACAGCCCACCATGGGGGACAGATACTTTTTGGACCTACAGATGGATATCTGTA
CCTTATGATGGGTGATGGTGGAAACAAAGGCGACCCTTTTAATTTTTCTCAAAATAAGAG
ATCACTTTTGGGGAAAATTATGAGGCTTGATGTTGATGGCGTTCAAAGCCAGAGTCAAAT
CATTAACCAGAGCTTGTGGGGTAATTATTCTGTTCCTAAAGACAACCCATTCAGTGACGA
CCGAGACTTACAACCAGAGATTTGGGCCTTGGGCTTGAGGAACCCATGGAGATGTAATTT
TGATTCTGAGAGGCCTTCCTATTTCTACTGTGCAGATGTTGGGCAGGATTTATATGAAGA
GGTAGATTTGATCTCGAAGGGTGGAAACTATGGATGGCGTGCATATGAGGGCCCATACAT
TTATCATCCAGAATGGACTCCTGGAGGGAATACATCGCTTAATTCTATAAATGCCATCTT
CCCTGTTATGGGCTACAGCCATTCTGCTATCAACAAGAACACTGGGTCTGCATCAATTAC
AGGTGGATTTGTTTATCGAGGGTCTTCTGATCCCTGCCTATATGGAAGGTACATATATGC
TGATCTTTACGCGTCAGCAATGTGGACCGGCACAGAGACCCCAGAGAGCAGCGGAAACTA
CACCTCAACTCTGATTCCGTTCAGCTGCTCCAAGAACTCTCCAATACCCTGCGAATCTGC
ATCAGGCAGCAACCAACCATCGTTGGGCTACATTTTCTCCTTCGGCGAGGACAACAACAA
GGATGTCTTCCTTCTAACATACAAAGGCGTCTACCGAGTTGTCCGGCCTAGCCTCTGCGG
CTACACCTGTGCCGCGGAGAAACCAGAGACCAACAACAATGGAACGTCTCCCTCAGGCTC
TTCATCATTTGCTTCAGGAAGGAGGATAGGGAAGTTGGCAGTAGTAATGGCGTTTGTTTT
GTGTGCATTATTCTTCTGAGATGTCCATCCCTGTTAGCTTGTTATATATCATGTATGGTT
TCTTTCGCACCTGCTGTACAGCATTGACGAGCCCTACACGTCTGTGTGACTGTTTGTGAT
TATTAGTAGTATTTGGTTGTGCTTAGTTCTCAAGTGGTGGGCTTGTGCAATGTAGCATTG
TGATGACTGAAAATTAATTAGCCGTGCTTGCCTTTAGGATTGGGCAATGGGCAAGAATAT
TTGGCAAGTGGAACCACGTTACTGTTATAAATGAAAGTTGTACGGGGGGTAAGCTTTGTT
CTGAACCTTTAGTTTTCGGGCTTGTTTGGTTTGGTGCTAAATTATGCCCAACTAATTCAT
TGGTAATTTTG