Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0685100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:27314277:27316173:1 gene:Os03g0685100 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA/rRNA methyltransferase, SpoU domain containing protein. (Os03t0685100-01)
Sequence

ATGCTACTGGCGCGCGCTCCGCCGCCGCCGGCGATGCCCTCGGCGGTCAGCTCGCCGCCG
CAACGGGAGAGCATACTCCGCCCATACTGCGTTCCCTGGACCCGCGGCTCCGTTGCGACG
GCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGGCGAGCAAAACCACAAGCAGGTAGCGAGC
GTGGCGAACCCCCTGGTGAAGCACTGCGTTAGGCTCAGGCTCTCCTCCGCGTACCGCCGC
TCCTGCCGCCGCATTCTCCTCGTCGGACTCATCCCCATCCTGGAGATGTGTAGCTTCGAA
TTCTCCACCATCGAAACCTTGCTTCTCTTGGACGGCATAGAGCTACCGGAGGAATTGTAC
GGGTTCTCTGGCAATGTCGTGTATGTCAGCGCCGCTGTGATGAAGAAAGTTTCTGGGATG
CAATCAGTTGATTCAACTGAGGCAATCGCTATCATTCACATGCCTAAGTATTTCCGCGAC
CTTGACAGCGACCAGGGTGGAGCTGTTCTTGATGAGTGGCTCGGCTCTGCAAAGAGGATT
TTGGTTCTGGATGGGATTCAGGACCCTGGTAACCTTGGAACATTGATAAGATCCGCTTGT
GCTTTCAGATGGGATGGGGTATTTCTTCTTCCAGCTTGCTGTGATCCTTTCAATGAAAAA
GCTCTTCGTGCAGCTCGTGGAGCCTCATTGCAGCTTCCAGTTGTTTCTGGTAACTGGTCT
GATCTGCATGCTTTGATGGCTAAATCTGATATGAAGATGCTGGCAGGTCATCCAGAAAGC
AGCAGTAATGGATCTGAAAGAACACATGTTCTATCTAAAGAACTAGCGGATTCACTGATG
AGTGAATCAGTGTGCTTAGTGTTAGGAAGTGAGGGCAATGGCCTTTCGGCAGATACCCTT
CAAGCCTGTGAGCTTGTAAACATTCCTATGCAAGGTACATTTGAATCTCTTAATGTTTCA
GTTGCAGGTGGTATCTTCTTATTTATGTTACAAACTAAACAGCAAAAAATGGCAGAACGT
TAA

Peptide Sequence

PEP ID

Os03t0685100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:27314277:27316173:1 gene:Os03g0685100 transcript:Os03t0685100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA/rRNA methyltransferase, SpoU domain containing protein. (Os03t0685100-01)
Sequence

MLLARAPPPPAMPSAVSSPPQRESILRPYCVPWTRGSVATAAVAKAAPFRGEQNHKQVAS
VANPLVKHCVRLRLSSAYRRSCRRILLVGLIPILEMCSFEFSTIETLLLLDGIELPEELY
GFSGNVVYVSAAVMKKVSGMQSVDSTEAIAIIHMPKYFRDLDSDQGGAVLDEWLGSAKRI
LVLDGIQDPGNLGTLIRSACAFRWDGVFLLPACCDPFNEKALRAARGASLQLPVVSGNWS
DLHALMAKSDMKMLAGHPESSSNGSERTHVLSKELADSLMSESVCLVLGSEGNGLSADTL
QACELVNIPMQGTFESLNVSVAGGIFLFMLQTKQQKMAER

Transcript Sequence

Transcript ID

Os03t0685100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:27314277:27316173:1 gene:Os03g0685100 gene_biotype:protein_coding transcript_biotype:protein_coding description:tRNA/rRNA methyltransferase, SpoU domain containing protein. (Os03t0685100-01)
Sequence

GACACGCGCCTCGCCGCCGCCCGCCGCGATGCTACTGGCGCGCGCTCCGCCGCCGCCGGC
GATGCCCTCGGCGGTCAGCTCGCCGCCGCAACGGGAGAGCATACTCCGCCCATACTGCGT
TCCCTGGACCCGCGGCTCCGTTGCGACGGCCGCCGTGGCGAAGGCTGCTCCTTTCCGGGG
CGAGCAAAACCACAAGCAGGTAGCGAGCGTGGCGAACCCCCTGGTGAAGCACTGCGTTAG
GCTCAGGCTCTCCTCCGCGTACCGCCGCTCCTGCCGCCGCATTCTCCTCGTCGGACTCAT
CCCCATCCTGGAGATGTGTAGCTTCGAATTCTCCACCATCGAAACCTTGCTTCTCTTGGA
CGGCATAGAGCTACCGGAGGAATTGTACGGGTTCTCTGGCAATGTCGTGTATGTCAGCGC
CGCTGTGATGAAGAAAGTTTCTGGGATGCAATCAGTTGATTCAACTGAGGCAATCGCTAT
CATTCACATGCCTAAGTATTTCCGCGACCTTGACAGCGACCAGGGTGGAGCTGTTCTTGA
TGAGTGGCTCGGCTCTGCAAAGAGGATTTTGGTTCTGGATGGGATTCAGGACCCTGGTAA
CCTTGGAACATTGATAAGATCCGCTTGTGCTTTCAGATGGGATGGGGTATTTCTTCTTCC
AGCTTGCTGTGATCCTTTCAATGAAAAAGCTCTTCGTGCAGCTCGTGGAGCCTCATTGCA
GCTTCCAGTTGTTTCTGGTAACTGGTCTGATCTGCATGCTTTGATGGCTAAATCTGATAT
GAAGATGCTGGCAGGTCATCCAGAAAGCAGCAGTAATGGATCTGAAAGAACACATGTTCT
ATCTAAAGAACTAGCGGATTCACTGATGAGTGAATCAGTGTGCTTAGTGTTAGGAAGTGA
GGGCAATGGCCTTTCGGCAGATACCCTTCAAGCCTGTGAGCTTGTAAACATTCCTATGCA
AGGTACATTTGAATCTCTTAATGTTTCAGTTGCAGGTGGTATCTTCTTATTTATGTTACA
AACTAAACAGCAAAAAATGGCAGAACGTTAACTGTTTAAGTCATCCTTGATTTTTTAATA
ATTTTATTGTTCTTGTCC