Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0679700-03
CDS Infomation	cds chromosome:IRGSP-1.0:3:26952058:26959001:1 gene:Os03g0679700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HMP-P synthase description:Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-01);Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-02);Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-03);Similar to thiamine biosynthesis protein thiC. (Os03t0679700-04)
Sequence	ATGGCTGCCCTGCAACCCTCATTCTCTTCAGCAATGGCTATGAAAAGTCTGAAGTTACCC AAAACTGCAGTTTTACCTGGATTTGGTGGTATTGCACGTCCTCAAGATGTGCAGGACAGG AGCGCTAACTTCACTTGTTCAAGGCCTAGAGCAGCTTCAGTGACTGACCAGTCAACAGCA GAGCCAGCAAAACCCAGGCAAAACAAGCACACTGTTGATCCTTCTGCTCCAGAATTTCTG CCACTCCCATCATTTGAAGAATGCTTTCCAAGGAGCACAAAAGAATCCAGAGAAATTGTG CACGAGGAATCTGGCCATGTCCTCAAGATCCCATTTAGGAGAATCCATTTGACCGGAGAT GAGAAGCATTTTGACACATACGACACCAGTGGTCCACAAAACATTAGTCCAAGGATTGGA CTTCCAAAGATAAGGAAGGAATGGATTGACAGGAGGGAGAAGTTAGGTGGTCCTCGATAC ACACAAATGTATTACGCTAAGCAGGGAATCATAACAGAGGAGATGTTGTACTGTGCCACA CGTGAGAACCTTAGTCCTGAATTTGTCCGGTCAGAGGTTGCCCGTGGACGAGCTATAATT CCTTCCAACAAGAGGCACCTGGAATTGGAACCCATGATTGTTGGACGAAACTTCCTTGTA AAAGTGAATGCAAACATTGGGAATTCTGCTGTTGTGAGCTCCATCGAGGAGGAAGTACAC AAGCTCCAGTGGGCTACAATGTGGGGAGCTGATACTGTCATGGACCTTTCAACAGGGCGT CATATCCATGAGACCCGGGAATGGATCCTTCGTAATTCTTCAGTCCCTATTGGGACGGTG CCTATTTACCAAGCACTTGAGAAAGTTAATGGTATTGCTGAAAATCTAAGCTGGGAAGTC TTTAGAGATACTTTAATCGAACAAGCTGAGCAGGGTGTTGATTACTTCACAATCCATGCT GGCGTGCTTCTTCGTTACATTCCTCTTACGGCAAAGAGAATGACCGGCATAGTTTCACGT GGTGGCTCTATCCATGCAAAATGGTGCCTAACATATCATAAGGAGAACTTTGCCTATGAG CACTGGGATGAAATTCTTGATATTTGCAATCAGTATGATGTGGCATTATCCATTGGCGAT GGTTTGAGACCAGGTTCTATTTATGATGCAAATGATAGTGCTCAGTTTGCAGAATTGCTG ACTCAAGGGGAACTCACACGCCGAGCTTGGGCAAAAGATGTGCAGGTAATGAATGAAGGC CCAGGGCACATTCCGATGCATAAAATTCCTGAAAACATGGAGAAGCAACTGGAGTGGTGC AATGAAGCACCTTTCTACACACTGGGGCCACTGACAACTGATATTGCACCTGGTTATGAT CACATCACCTCCGCCATTGGTGCTGCCAACATTGGGGCTCTTGGCACTGCACTTCTCTGT TATGTAACACCAAAGGAGCACCTTGGATTGCCTAACCGTGATGATGTTAAGACAGGCGTG ATATCCTACAAAATTTCTGCTCATGCTGCTGATTTGGCAAAGGGCCATCCCTATGCACAA GCATGGGACGATACACTAAGCAAGGCAAGATTTGAGTTTAGATGGTTGGATCAATTTGCT CTATCTCTGGATCCTGTGACCGCTATGTCTTTCCATGATGAAACATTACCATCGGAGGGT GCCAAAGTGGCACATTTCTGCTCAATGTGTGGCCCAAAGTTTTGTTCGATGAAAATCACA GAGGATATTAGAAAATATGCTGATGAACATGGTTACGGGACAGTGGAGGAAGCGGTGATA CAAGGAATGAATGCTATGAGTGCTGAGTTTTCAGCTGCAAGGAAAACAATCAGTGGGGAG CAACATGGTGAAGCTGGAGGGGAGATATATGTTCCAGAAAGCTATACAGCTCGCAAATAA

Peptide Sequence

PEP ID	Os03t0679700-03
PEP Infomation	pep chromosome:IRGSP-1.0:3:26952058:26959001:1 gene:Os03g0679700 transcript:Os03t0679700-03 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HMP-P synthase description:Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-01);Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-02);Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-03);Similar to thiamine biosynthesis protein thiC. (Os03t0679700-04)
Sequence	MAALQPSFSSAMAMKSLKLPKTAVLPGFGGIARPQDVQDRSANFTCSRPRAASVTDQSTA EPAKPRQNKHTVDPSAPEFLPLPSFEECFPRSTKESREIVHEESGHVLKIPFRRIHLTGD EKHFDTYDTSGPQNISPRIGLPKIRKEWIDRREKLGGPRYTQMYYAKQGIITEEMLYCAT RENLSPEFVRSEVARGRAIIPSNKRHLELEPMIVGRNFLVKVNANIGNSAVVSSIEEEVH KLQWATMWGADTVMDLSTGRHIHETREWILRNSSVPIGTVPIYQALEKVNGIAENLSWEV FRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLTYHKENFAYE HWDEILDICNQYDVALSIGDGLRPGSIYDANDSAQFAELLTQGELTRRAWAKDVQVMNEG PGHIPMHKIPENMEKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLC YVTPKEHLGLPNRDDVKTGVISYKISAHAADLAKGHPYAQAWDDTLSKARFEFRWLDQFA LSLDPVTAMSFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDIRKYADEHGYGTVEEAVI QGMNAMSAEFSAARKTISGEQHGEAGGEIYVPESYTARK

Transcript Sequence

Transcript ID	Os03t0679700-03
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:26952058:26959001:1 gene:Os03g0679700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HMP-P synthase description:Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-01);Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-02);Similar to Thiamine biosynthesis protein thiC. (Os03t0679700-03);Similar to thiamine biosynthesis protein thiC. (Os03t0679700-04)
Sequence	GCTCACGAGTTCCTCACTTCCTCCTCCGCCCGCGTCGCCCCTCCTCTCCTCTCCCTCCCG GCTCCCGGCTACCGCCGCCGCCGCCCCGAGGAAATGGCTGCCCTGCAACCCTCATTCTCT TCAGCAATGGCTATGAAAAGTCTGAAGTTACCCAAAACTGCAGTTTTACCTGGATTTGGT GGTATTGCACGTCCTCAAGATGTGCAGGACAGGAGCGCTAACTTCACTTGTTCAAGGCCT AGAGCAGCTTCAGTGACTGACCAGTCAACAGCAGAGCCAGCAAAACCCAGGCAAAACAAG CACACTGTTGATCCTTCTGCTCCAGAATTTCTGCCACTCCCATCATTTGAAGAATGCTTT CCAAGGAGCACAAAAGAATCCAGAGAAATTGTGCACGAGGAATCTGGCCATGTCCTCAAG ATCCCATTTAGGAGAATCCATTTGACCGGAGATGAGAAGCATTTTGACACATACGACACC AGTGGTCCACAAAACATTAGTCCAAGGATTGGACTTCCAAAGATAAGGAAGGAATGGATT GACAGGAGGGAGAAGTTAGGTGGTCCTCGATACACACAAATGTATTACGCTAAGCAGGGA ATCATAACAGAGGAGATGTTGTACTGTGCCACACGTGAGAACCTTAGTCCTGAATTTGTC CGGTCAGAGGTTGCCCGTGGACGAGCTATAATTCCTTCCAACAAGAGGCACCTGGAATTG GAACCCATGATTGTTGGACGAAACTTCCTTGTAAAAGTGAATGCAAACATTGGGAATTCT GCTGTTGTGAGCTCCATCGAGGAGGAAGTACACAAGCTCCAGTGGGCTACAATGTGGGGA GCTGATACTGTCATGGACCTTTCAACAGGGCGTCATATCCATGAGACCCGGGAATGGATC CTTCGTAATTCTTCAGTCCCTATTGGGACGGTGCCTATTTACCAAGCACTTGAGAAAGTT AATGGTATTGCTGAAAATCTAAGCTGGGAAGTCTTTAGAGATACTTTAATCGAACAAGCT GAGCAGGGTGTTGATTACTTCACAATCCATGCTGGCGTGCTTCTTCGTTACATTCCTCTT ACGGCAAAGAGAATGACCGGCATAGTTTCACGTGGTGGCTCTATCCATGCAAAATGGTGC CTAACATATCATAAGGAGAACTTTGCCTATGAGCACTGGGATGAAATTCTTGATATTTGC AATCAGTATGATGTGGCATTATCCATTGGCGATGGTTTGAGACCAGGTTCTATTTATGAT GCAAATGATAGTGCTCAGTTTGCAGAATTGCTGACTCAAGGGGAACTCACACGCCGAGCT TGGGCAAAAGATGTGCAGGTAATGAATGAAGGCCCAGGGCACATTCCGATGCATAAAATT CCTGAAAACATGGAGAAGCAACTGGAGTGGTGCAATGAAGCACCTTTCTACACACTGGGG CCACTGACAACTGATATTGCACCTGGTTATGATCACATCACCTCCGCCATTGGTGCTGCC AACATTGGGGCTCTTGGCACTGCACTTCTCTGTTATGTAACACCAAAGGAGCACCTTGGA TTGCCTAACCGTGATGATGTTAAGACAGGCGTGATATCCTACAAAATTTCTGCTCATGCT GCTGATTTGGCAAAGGGCCATCCCTATGCACAAGCATGGGACGATACACTAAGCAAGGCA AGATTTGAGTTTAGATGGTTGGATCAATTTGCTCTATCTCTGGATCCTGTGACCGCTATG TCTTTCCATGATGAAACATTACCATCGGAGGGTGCCAAAGTGGCACATTTCTGCTCAATG TGTGGCCCAAAGTTTTGTTCGATGAAAATCACAGAGGATATTAGAAAATATGCTGATGAA CATGGTTACGGGACAGTGGAGGAAGCGGTGATACAAGGAATGAATGCTATGAGTGCTGAG TTTTCAGCTGCAAGGAAAACAATCAGTGGGGAGCAACATGGTGAAGCTGGAGGGGAGATA TATGTTCCAGAAAGCTATACAGCTCGCAAATAAGATCGTCTTGGTGTCCATCTACTCCGG GTGGAGCGTTTATCAGCAGCACTCCTCACCATCCTATGTTAGGAGGTGGCCTCTTGGCCT GGATTGTTGTGAATTGGGCTGAGAAAGTCCCTTTGAACCTGAACAGGATAATGCCTGCGA AGGGAGTGTGCATTTCTACTTTTATGTTTCCAGGGAACTCTCAACACAACCCCTTTTTGG TGGGAGATCGAGCTATCCAATATGTTCCTGAACGTGTGAGCTCAGCAGCTGGATATACCT GTTTCTTACAACTGAGGTAACATGGTAATAATACTTCATTTGATAAGTGGCATGCTGACA TTTCTCCAACAGGAGAGGATTTCTGCAGATACCACTTCGTAATGTCCCAGAACTGATTTA GTCATACATTTATTATCCGTGTAAATTTGCAAAGCGTTGGCCATGTCCTATGCAATTGAT TTTAAACCATCTATCTGCACATATCTAATTAAAGTATAAAACAATTTATAAACTCTACAT AATGGACATTTTAGCTGCATGCCACTTGTCAATTGAGCACACAATATACTGACTAAATTC AATTTAACTTGATCATGATTCATGTGGAAGGTGTTTATTAGGAATTAATTTATTGATATG GCCAGAGACTTGTTTATTTTTAGCTATTTATTTGTCTTTCCCATAGAAATGATCAAATTT TGTACTTGCACCTTGTGTAAGTATAATAGAATTATTTAGTCTGTTTTGGAGCATTCATTA ATGCAATGATGCTCAGCCGCTCAGATCTTTGCGTAGCATTATCCAAGAAAACAAGTCTTT TTGTATCCCCTAGATAATTTGAAAGCACCCATACATGCACAATAGCATGTGAAAAAGAAC TTTAGCTAGGTTCTGTTGACCGATTATGTTGTAGGATAGGAATCATCTGCCTGTAGAACA TAATTTGGGCATTATCTTCTGATGTTATAATCATGTTTTTCTCAGCAAACTATTACTCCG CACTCCATTTTGTGTTTGCGATGTGGAATTATTTTACCTGTGATCCAATCCCATTATTTG ACTGACGTGAAACGTTAAGTGAAATGACGTGTGGACAAAGTTGCTCGTGGCTGGAGTCTT TATGCTCGTGGTTAACAATTTGGAGATGAATTTTGCTCTGATTGTGCTCCTGCAATGTGT TTTTAATTTTCATCATAACGGATCTTGACACTATTTTCTATCAGATTGTTACCTGTTGTT CATTCCGAGTTCAGTACTACTATACAATGTCCGATCAAGTTCAG