Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0671800-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:26505145:26509491:-1 gene:Os03g0671800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 020 description:Helix-loop-helix DNA-binding domain containing protein. (Os03t0671800-01)
Sequence	ATGGAGGACTCGAGCCTGTTCATGGAGTGGGCCATGGAGACGCTGCAGCACCTGCACCCG CTGCCGGCGACGCCGCCGCCTGCCGGCGGCGGGTACGCCGGCGACAACGCGACTTTTCCG TCGCTCCAAGCGCTCCGCGAGTCGTCGGTGTCGCAGAACGGCATGGCCCCGCCGGAGCCA ACGGCGCACGAAGGCCACCGAGCCTCCAACAGCTGGAGCTCGGGCGACACGGACAGCGTG TCCGGTGGCGGCGGCGGCGCGGTCATGGAGCACGACGGATGGTCGACGTCGCCAAATTCG GTCAGGTGCGCCGCTGGCGGCGGGGGCGGCGGCGGCGGCGGCGGCCTCTGGCCCGTGAGC TGGAACTTCTCGTCGGCCATGACGCAGCCGTGCAACGATCAGGCCACGCCGTCGAACCCG CCGACGACGACGAGAGCGCGCTACGGCGGCGGCGGCGTTCGATACCTGCCGGCCGCCGTG TCGCCATCGCCATCTGCACAGACACGGAGAGCCTCCTCCAAAGGCAACGGCGGCGGTGGC TCCGGCTCCTCGTCGGCGGCGCCGTACGCGCAGGAGCACATCATCGCGGAGCGCAAGCGC CGGGAGAAGATCAACCAGCGGTTCATCGAGCTCTCCACCGTCATCCCGGGCCTCAAGAAG ATGGACAAGGCGACGATCCTCTCCGACGCGGTGAGGTACGTGAAGGAGATGCAGGAGAAG CTCAGCGAGCTCGAGCAACACCAGAACGGCGGCGTCGAGTCGGCAATACTCCTCAAGAAG CCGTGCATAGCCACGTCGTCGTCGGACGGCGGCTGCCCCGCAGCGTCATCGGCCGTGGCT GGAAGCAGCAGCAGCGGCACGGCGAGAAGCTCGCTGCCGGAGATCGAGGCGAAGATCTCG CACGGCAACGTGATGGTGAGGATCCACGGCGAGAATAATGGCAAGGGGTCGCTGGTGCGG CTGCTCGCCGCGGTTGAAGGGCTCCACCTCGGCATCACGCACACCAATGTCATGCCCTTC TCGGCATGCACCGCCATCATAACCATCATGGCAAAGGTGGAGGACGGGGTGAGCGTCACA GCTGAGGACATTGTAGGGAAGCTAAACACTGTGCTCCAGCAAAACAGCAGAAATAGCGCG CGAGAAACAAAAAGCTGA

Peptide Sequence

PEP ID	Os03t0671800-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:26505145:26509491:-1 gene:Os03g0671800 transcript:Os03t0671800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 020 description:Helix-loop-helix DNA-binding domain containing protein. (Os03t0671800-01)
Sequence	MEDSSLFMEWAMETLQHLHPLPATPPPAGGGYAGDNATFPSLQALRESSVSQNGMAPPEP TAHEGHRASNSWSSGDTDSVSGGGGGAVMEHDGWSTSPNSVRCAAGGGGGGGGGGLWPVS WNFSSAMTQPCNDQATPSNPPTTTRARYGGGGVRYLPAAVSPSPSAQTRRASSKGNGGGG SGSSSAAPYAQEHIIAERKRREKINQRFIELSTVIPGLKKMDKATILSDAVRYVKEMQEK LSELEQHQNGGVESAILLKKPCIATSSSDGGCPAASSAVAGSSSSGTARSSLPEIEAKIS HGNVMVRIHGENNGKGSLVRLLAAVEGLHLGITHTNVMPFSACTAIITIMAKVEDGVSVT AEDIVGKLNTVLQQNSRNSARETKS

Transcript Sequence

Transcript ID	Os03t0671800-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:26505145:26509491:-1 gene:Os03g0671800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:basic helix-loop-helix protein 020 description:Helix-loop-helix DNA-binding domain containing protein. (Os03t0671800-01)
Sequence	TAGATAGCTAGTAGAGTTCTTTTTCTTTGGAGACATGGAGGACTCGAGCCTGTTCATGGA GTGGGCCATGGAGACGCTGCAGCACCTGCACCCGCTGCCGGCGACGCCGCCGCCTGCCGG CGGCGGGTACGCCGGCGACAACGCGACTTTTCCGTCGCTCCAAGCGCTCCGCGAGTCGTC GGTGTCGCAGAACGGCATGGCCCCGCCGGAGCCAACGGCGCACGAAGGCCACCGAGCCTC CAACAGCTGGAGCTCGGGCGACACGGACAGCGTGTCCGGTGGCGGCGGCGGCGCGGTCAT GGAGCACGACGGATGGTCGACGTCGCCAAATTCGGTCAGGTGCGCCGCTGGCGGCGGGGG CGGCGGCGGCGGCGGCGGCCTCTGGCCCGTGAGCTGGAACTTCTCGTCGGCCATGACGCA GCCGTGCAACGATCAGGCCACGCCGTCGAACCCGCCGACGACGACGAGAGCGCGCTACGG CGGCGGCGGCGTTCGATACCTGCCGGCCGCCGTGTCGCCATCGCCATCTGCACAGACACG GAGAGCCTCCTCCAAAGGCAACGGCGGCGGTGGCTCCGGCTCCTCGTCGGCGGCGCCGTA CGCGCAGGAGCACATCATCGCGGAGCGCAAGCGCCGGGAGAAGATCAACCAGCGGTTCAT CGAGCTCTCCACCGTCATCCCGGGCCTCAAGAAGATGGACAAGGCGACGATCCTCTCCGA CGCGGTGAGGTACGTGAAGGAGATGCAGGAGAAGCTCAGCGAGCTCGAGCAACACCAGAA CGGCGGCGTCGAGTCGGCAATACTCCTCAAGAAGCCGTGCATAGCCACGTCGTCGTCGGA CGGCGGCTGCCCCGCAGCGTCATCGGCCGTGGCTGGAAGCAGCAGCAGCGGCACGGCGAG AAGCTCGCTGCCGGAGATCGAGGCGAAGATCTCGCACGGCAACGTGATGGTGAGGATCCA CGGCGAGAATAATGGCAAGGGGTCGCTGGTGCGGCTGCTCGCCGCGGTTGAAGGGCTCCA CCTCGGCATCACGCACACCAATGTCATGCCCTTCTCGGCATGCACCGCCATCATAACCAT CATGGCAAAGGTGGAGGACGGGGTGAGCGTCACAGCTGAGGACATTGTAGGGAAGCTAAA CACTGTGCTCCAGCAAAACAGCAGAAATAGCGCGCGAGAAACAAAAAGCTGACAAACAGC AACAAACGACAGCTGCTAGCTAGCTTGGCTAGCTACTCAATCAGGCATGTTGCCATTGAT TCCAGAACAGTGTAAACACACACTCTCTCTCGATCTGCTCGTCGTGTACTTGCGTGCATC TGGCCCGTGATGCATGCATTTGCACAAATAAATCTAGCACTGGATACAATTTATCTTAGT GCAATAAGTTTAAATATATCATATTTAGTACTAGATTTAGTTTTTTGGACGGAGAGAATA CTAGCTAGAGCTACGAATGCACTCTCTATAGCCGAATAATCTTAAGATGTACCGGTTCAA CTTTTTTTAAAGATGTTCATAGGAGATAAGATGTGTGCATGTACATTTATATCAATGAGT GTTTTGCATGTTATGAGTATCATCATTTGTACAATGTTTTTTTTAAAAAATATTATGCTG ATGTTGATCGATTGGTC