Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0655700-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:25586373:25590653:1 gene:Os03g0655700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 3-isopropylmalate dehydrogenase 2. (Os03t0655700-01);Similar to 3-isopropylmalate dehydrogenase. (Os03t0655700-02)
Sequence

ATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCG
CCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGG
AGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCC
AAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAG
CTGATGGGCGGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCG
GCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAAC
AATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTC
TTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAA
AAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATAC
TTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACT
GAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGC
AAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTT
TGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATG
TATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTC
ACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATT
GGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCAT
GGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGT
GCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCC
GCAGTTACAGAGACACTAAACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACG
ACCTTGGTCGGATGCAAGCGAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGC
GCGGTTGCTCTAAACTCGTAG

Peptide Sequence

PEP ID

Os03t0655700-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:25586373:25590653:1 gene:Os03g0655700 transcript:Os03t0655700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 3-isopropylmalate dehydrogenase 2. (Os03t0655700-01);Similar to 3-isopropylmalate dehydrogenase. (Os03t0655700-02)
Sequence

IQANPLIKTLALSPRRRMAPPAPATARRPMAAVRCSAAKRSYNVTLLPGDGIGPEVVAVA
KDVLSLAGALEGVEFRFQEKLMGGAAVDAYGVPLPEETLAAAQASDAVLLGAIGGYKWDN
NEKHLKPETGLLQIRAGLGVFANLRPAAVLPQLVDASTLKKEVAEGVDIMVVRELTGGIY
FGQPRGFGKNDKGEDTGFNTEVYSASEIDRITRVAFEVARKRRGKLCSVDKANVLEASML
WRKRVTSLASEFPDIELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMLTGSI
GMLPSASVGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLRYGLGEENAAKRVEA
AVTETLNNGFRTGDIYSPGTTLVGCKRMGEEVLKTVESQSAVALNS

Transcript Sequence

Transcript ID

Os03t0655700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:25586373:25590653:1 gene:Os03g0655700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to 3-isopropylmalate dehydrogenase 2. (Os03t0655700-01);Similar to 3-isopropylmalate dehydrogenase. (Os03t0655700-02)
Sequence

AATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCC
GCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAG
GAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGC
CAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAA
GCTGATGGGCGGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGC
GGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAA
CAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGT
CTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAA
AAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATA
CTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACAC
TGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCG
CAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCT
TTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACAT
GTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGT
CACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCAT
TGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCA
TGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAG
TGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGC
CGCAGTTACAGAGACACTAAACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAAC
GACCTTGGTCGGATGCAAGCGAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAG
CGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGG
TCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGAT
GTTTTTTGCCTGTCCTTGTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTTTCCCCTT
TTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCCAACAA
TAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTAC
TAACGTTGGTTGAGTATATATACTACCCCCATCTCCTGTT