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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0647800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:25093039:25096872:-1 gene:Os03g0647800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to expp1 protein. (Os03t0647800-01)
Sequence

ATGGCCGCCTCCGCCTCCGCGCCGCCGCATTCGCTGCTGCTGGCCGCCGTCGCGCTCGCG
GCGCTCGCGTCGGTGGCGGCGGCGAGGGACGAGAACGGGGTGTACGACCCCTGCAGCGAC
ACGCGGATCCAGCGCGGGGACGGGTTCAGCTTCGGGATCGCCTTCGCCACCCTCGGCGCC
TTCTACTCCGGCGGATCCGTGCAGCTCTCCCCCTGCGACCGCCGCCTCAGCCTCGCCTCC
TCCGGCCAGCTCGCCGTCTTCCGCCCCAAGGTCGACGAGATCTCCCTCCTCACCATCAAC
ACCACCACCGGCTTCAACCCCGCCACAGCTGGTGGGTACATGGTAGCATTTGCCGGTAGG
AAGTATGCAGCCCGGTCTGTTCCAACCTTTGTGTCCAATTCCTCATATACAGTCTCCAGC
TTCACCCTGGTTCTTGAGTTCAATAAAGGCAGGCTTCAAAACTTGCATTGGAAGAAGGAT
GGCTGTGGTGCTTGCGCGAAATCTTCAAGCCTTGTTTGCATCGGCAAGCAAACCTGTGCC
TTCAGAACACAGAGCTGCAAGAGCCAGGGACCTGTTGACTGCAGTATCGGCATCCAGCTG
GCTTTCTCAGGCACCGATAAACACGAATCAGTTCTGAACTCGTGGTATGAGGTGTCTAAC
CTGCGGCAATACTCCCTCTACGGGCTGTACTCGAACCTGAAGGACACCCTGAGCGGCCAG
TTCAACAAGTTCTTCTAG

Peptide Sequence

PEP ID

Os03t0647800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:25093039:25096872:-1 gene:Os03g0647800 transcript:Os03t0647800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to expp1 protein. (Os03t0647800-01)
Sequence

MAASASAPPHSLLLAAVALAALASVAAARDENGVYDPCSDTRIQRGDGFSFGIAFATLGA
FYSGGSVQLSPCDRRLSLASSGQLAVFRPKVDEISLLTINTTTGFNPATAGGYMVAFAGR
KYAARSVPTFVSNSSYTVSSFTLVLEFNKGRLQNLHWKKDGCGACAKSSSLVCIGKQTCA
FRTQSCKSQGPVDCSIGIQLAFSGTDKHESVLNSWYEVSNLRQYSLYGLYSNLKDTLSGQ
FNKFF

Transcript Sequence

Transcript ID

Os03t0647800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:25093039:25096872:-1 gene:Os03g0647800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to expp1 protein. (Os03t0647800-01)
Sequence

CTCAACTCAACCACTTCTCCTACTACAGCCAACCTCCTCTTGCCTCGCCTCGCCACGGAT
CGCGCCGCCATGGCCGCCTCCGCCTCCGCGCCGCCGCATTCGCTGCTGCTGGCCGCCGTC
GCGCTCGCGGCGCTCGCGTCGGTGGCGGCGGCGAGGGACGAGAACGGGGTGTACGACCCC
TGCAGCGACACGCGGATCCAGCGCGGGGACGGGTTCAGCTTCGGGATCGCCTTCGCCACC
CTCGGCGCCTTCTACTCCGGCGGATCCGTGCAGCTCTCCCCCTGCGACCGCCGCCTCAGC
CTCGCCTCCTCCGGCCAGCTCGCCGTCTTCCGCCCCAAGGTCGACGAGATCTCCCTCCTC
ACCATCAACACCACCACCGGCTTCAACCCCGCCACAGCTGGTGGGTACATGGTAGCATTT
GCCGGTAGGAAGTATGCAGCCCGGTCTGTTCCAACCTTTGTGTCCAATTCCTCATATACA
GTCTCCAGCTTCACCCTGGTTCTTGAGTTCAATAAAGGCAGGCTTCAAAACTTGCATTGG
AAGAAGGATGGCTGTGGTGCTTGCGCGAAATCTTCAAGCCTTGTTTGCATCGGCAAGCAA
ACCTGTGCCTTCAGAACACAGAGCTGCAAGAGCCAGGGACCTGTTGACTGCAGTATCGGC
ATCCAGCTGGCTTTCTCAGGCACCGATAAACACGAATCAGTTCTGAACTCGTGGTATGAG
GTGTCTAACCTGCGGCAATACTCCCTCTACGGGCTGTACTCGAACCTGAAGGACACCCTG
AGCGGCCAGTTCAACAAGTTCTTCTAGGCTTTTGGTGCACCCGTTGTTCATACTCTTCTG
CCACTATTTCTCTGGAGCTCCCTGCCTGATGCTGTACCTATTGCTCGTTAGGTTTGCCCG
ATCTGATTTTAGCTTGTGTGGAGATGCTCTTCTGCGTCATTTTCCACTAGTATTCTTTCC
ATTCCAGTTCCCACTTAACTTCAATTATCTGATGGGTTGCTATATGTTAATGTCATGTAC
GCAAGAAAGGTCCTTGTCCGGTTTGCGCGTTTGTAAAAAAACTTCTGGAGTGAATCATGA
TATTAACAGCTTTCATCTATGTACCAGTCGCCACATGTTTCAG