Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0645900-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:24959201:24961260:1 gene:Os03g0645900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 1 description:Carotenoid oxygenase family protein. (Os03t0645900-00)
Sequence

ATGGCGACGATCACGACGCCAGGATATGCTCACATACAGCGGCAGCACGGCAGGTGCTCG
ACGACGGCGGGAAGGCGTGGGGCGTCCAATTCGGTGAGATTCTCCGCGCGCGCGGTTAGC
TCCGTGCCGCACGCGGCGGCGGCGTCATCGGCGCCGGCGTTCCTGCCGGTGCCGTTCGTG
CCTGGGGCCGACGCACCGTCGCCGTCGGGGAAGAGTGCCATTGGCGTCCCGAAGGCGCCG
AGGAAGGGGGAGGAGGGGAAGAGGCTCAACTTCTTCCAGCGCGCCGCGGCGATGGCGCTC
GACGCGTTCGAGGAGGGGTTTGTGGCGAATGTCCTCGAGCGCCCGCACGGGCTGCCGAGC
ACGGCCGACCCCGCGGTGCAGATCGCCGGCAACTTCGCGCCGGTCGGTGAGACGCCGCCC
GCGCGCGCGCTGCCGGTGTCGGGGCGCATCCCGCCCTTCATCAACGGCGTCTACGCGCGC
AACGGCGCCAACCCGCACTTCGACCCCGTCGCCGGGCACCACCTGTTCGACGGCGATGGC
ATGGTGCACGCCGTCAGGATACGCAACGGCGCCGCCGAGTCGTACGCGTGCCGGTTCACG
GAGACCGCGCGGCTGCGGCAGGAGCGCGCGATGGGGCGGCCCATGTTCCCCAAGGCCATT
GGGGAGCTCCATGGCCACTCCGGCATCGCGCGCCTTGCTCTGTTCTACGCGCGCGCCGCC
TGCGGCCTCCTCGACCCGTCACACGGCACCGGCGTCGCCAACGCCGGCCTCATCTACTTC
AACGGCAGGCTCCTCGCCATGTCGGAGGACGACCTCCCCTACCAGGTGCGCGTCACCGCC
GACGGCGACCTCGAGACCGTCGGCCGCTACGACTTCGACGGGCAGCTCGGCTGCGCCATG
ATCGCGCACCCCAAGCTCGACCCGGCCACCGGAGAGCTCCACGCGCTCAGCTACGACGTG
ATCAAGAAGCCGTACCTCAAGTACTTCTACTTCGCGCCCGACGGCACCAAGTCGGCCGAC
GTCGAGATCCCGCTCGACCAGCCCACCATGATCCACGACTTCGCCATCACCGAGAACTAC
GTGGTGGTACCCGACCACCAGGTGGTGTTCAAGCTCCAGGAGATGCTCCGCGGCGGCTCG
CCCGTGGTGCTCGACAAGGAGAAGACGTCGCGGTTCGGGGTGCTCCCCAAGCACGCCGCG
GACGCGTCGGAGATGGTGTGGGTGGACGTCCCGGACTGCTTCTGCTTCCACCTCTGGAAC
GCGTGGGAGGAGGCGGACACCGACGAGGTGGTGGTGATCGGCTCGTGCATGACCCCCGCC
GACTCCATCTTCAACGAGTCCGACGACCGCCTCGAGAGCGTCCTCACCGAGATCCGCCTC
AACACCCGCACCGGCGAGTCGACGCGGCGCGCCATCCTGCCGCCGTCGAGCCAGGTCAAC
CTCGAGGTGGGCATGGTCAACCGCAACCTCCTCGGCCGCAAGACGCGGTACGCCTACCTC
GCCGTGGCCGAGCCGTGGCCCAAGGTGTCGGGCTTCGCCAAGGTGGACCTCGCCACGGGT
GAGCTCACCAAGTTCGAGTACGGCGAGGGCCGGTTCGGCGGCGAGCCCTGCTTCGTCCCC
ATGGACGCCGCCGCCGCCACGCCCCGCGGCGAGGACGACGGCTACATCCTGTCCTTCGTC
CACGACGAGCGCGCCGGGACCTCCGAGCTCCTCGTCGTCAATGCCGCCGACATGCGCCTT
GAGGCCACCGTGCAGCTGCCGTCCCGCGTGCCGTACGGCTTCCACGGCACGTTCATCACC
GGCGACGAGCTCACCACCCAGGCCTGA

Peptide Sequence

PEP ID

Os03t0645900-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:24959201:24961260:1 gene:Os03g0645900 transcript:Os03t0645900-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 1 description:Carotenoid oxygenase family protein. (Os03t0645900-00)
Sequence

MATITTPGYAHIQRQHGRCSTTAGRRGASNSVRFSARAVSSVPHAAAASSAPAFLPVPFV
PGADAPSPSGKSAIGVPKAPRKGEEGKRLNFFQRAAAMALDAFEEGFVANVLERPHGLPS
TADPAVQIAGNFAPVGETPPARALPVSGRIPPFINGVYARNGANPHFDPVAGHHLFDGDG
MVHAVRIRNGAAESYACRFTETARLRQERAMGRPMFPKAIGELHGHSGIARLALFYARAA
CGLLDPSHGTGVANAGLIYFNGRLLAMSEDDLPYQVRVTADGDLETVGRYDFDGQLGCAM
IAHPKLDPATGELHALSYDVIKKPYLKYFYFAPDGTKSADVEIPLDQPTMIHDFAITENY
VVVPDHQVVFKLQEMLRGGSPVVLDKEKTSRFGVLPKHAADASEMVWVDVPDCFCFHLWN
AWEEADTDEVVVIGSCMTPADSIFNESDDRLESVLTEIRLNTRTGESTRRAILPPSSQVN
LEVGMVNRNLLGRKTRYAYLAVAEPWPKVSGFAKVDLATGELTKFEYGEGRFGGEPCFVP
MDAAAATPRGEDDGYILSFVHDERAGTSELLVVNAADMRLEATVQLPSRVPYGFHGTFIT
GDELTTQA

Transcript Sequence

Transcript ID

Os03t0645900-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24959201:24961260:1 gene:Os03g0645900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:9-CIS-EPOXYCAROTENOID DIOXYGENASE 1 description:Carotenoid oxygenase family protein. (Os03t0645900-00)
Sequence

ATATACGCTCACTGGCTACCTCCCCTCCCAAACCATCCAAACCGACGAGCTCTCTTCCTC
TCTCTCCAGCTCGGTCTCACACACACTCTCTCTCTCTCGGCAGAAACACACCACGATCGC
GGCCAAAACCCACGCGATTGTAGCTCAGATTGTTGTGCGATCGACGCGATATGGCGACGA
TCACGACGCCAGGATATGCTCACATACAGCGGCAGCACGGCAGGTGCTCGACGACGGCGG
GAAGGCGTGGGGCGTCCAATTCGGTGAGATTCTCCGCGCGCGCGGTTAGCTCCGTGCCGC
ACGCGGCGGCGGCGTCATCGGCGCCGGCGTTCCTGCCGGTGCCGTTCGTGCCTGGGGCCG
ACGCACCGTCGCCGTCGGGGAAGAGTGCCATTGGCGTCCCGAAGGCGCCGAGGAAGGGGG
AGGAGGGGAAGAGGCTCAACTTCTTCCAGCGCGCCGCGGCGATGGCGCTCGACGCGTTCG
AGGAGGGGTTTGTGGCGAATGTCCTCGAGCGCCCGCACGGGCTGCCGAGCACGGCCGACC
CCGCGGTGCAGATCGCCGGCAACTTCGCGCCGGTCGGTGAGACGCCGCCCGCGCGCGCGC
TGCCGGTGTCGGGGCGCATCCCGCCCTTCATCAACGGCGTCTACGCGCGCAACGGCGCCA
ACCCGCACTTCGACCCCGTCGCCGGGCACCACCTGTTCGACGGCGATGGCATGGTGCACG
CCGTCAGGATACGCAACGGCGCCGCCGAGTCGTACGCGTGCCGGTTCACGGAGACCGCGC
GGCTGCGGCAGGAGCGCGCGATGGGGCGGCCCATGTTCCCCAAGGCCATTGGGGAGCTCC
ATGGCCACTCCGGCATCGCGCGCCTTGCTCTGTTCTACGCGCGCGCCGCCTGCGGCCTCC
TCGACCCGTCACACGGCACCGGCGTCGCCAACGCCGGCCTCATCTACTTCAACGGCAGGC
TCCTCGCCATGTCGGAGGACGACCTCCCCTACCAGGTGCGCGTCACCGCCGACGGCGACC
TCGAGACCGTCGGCCGCTACGACTTCGACGGGCAGCTCGGCTGCGCCATGATCGCGCACC
CCAAGCTCGACCCGGCCACCGGAGAGCTCCACGCGCTCAGCTACGACGTGATCAAGAAGC
CGTACCTCAAGTACTTCTACTTCGCGCCCGACGGCACCAAGTCGGCCGACGTCGAGATCC
CGCTCGACCAGCCCACCATGATCCACGACTTCGCCATCACCGAGAACTACGTGGTGGTAC
CCGACCACCAGGTGGTGTTCAAGCTCCAGGAGATGCTCCGCGGCGGCTCGCCCGTGGTGC
TCGACAAGGAGAAGACGTCGCGGTTCGGGGTGCTCCCCAAGCACGCCGCGGACGCGTCGG
AGATGGTGTGGGTGGACGTCCCGGACTGCTTCTGCTTCCACCTCTGGAACGCGTGGGAGG
AGGCGGACACCGACGAGGTGGTGGTGATCGGCTCGTGCATGACCCCCGCCGACTCCATCT
TCAACGAGTCCGACGACCGCCTCGAGAGCGTCCTCACCGAGATCCGCCTCAACACCCGCA
CCGGCGAGTCGACGCGGCGCGCCATCCTGCCGCCGTCGAGCCAGGTCAACCTCGAGGTGG
GCATGGTCAACCGCAACCTCCTCGGCCGCAAGACGCGGTACGCCTACCTCGCCGTGGCCG
AGCCGTGGCCCAAGGTGTCGGGCTTCGCCAAGGTGGACCTCGCCACGGGTGAGCTCACCA
AGTTCGAGTACGGCGAGGGCCGGTTCGGCGGCGAGCCCTGCTTCGTCCCCATGGACGCCG
CCGCCGCCACGCCCCGCGGCGAGGACGACGGCTACATCCTGTCCTTCGTCCACGACGAGC
GCGCCGGGACCTCCGAGCTCCTCGTCGTCAATGCCGCCGACATGCGCCTTGAGGCCACCG
TGCAGCTGCCGTCCCGCGTGCCGTACGGCTTCCACGGCACGTTCATCACCGGCGACGAGC
TCACCACCCAGGCCTGATCCATCGATCGAACACCTCCACGTTTCTTGGGGGGGGGAGGAA
GTGACCAGAGGGAGCCTGAC