Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0645100-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:24904283:24905460:1 gene:Os03g0645100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-01);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-02);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-03)
Sequence

GTCTTACTGTTTGAGGCTCTTCGCGAGGCCTTGATAGAAGAGATGAAAGAAGATCCAACG
GTATGTGTCTTTGGTGAAGATGTCGGTCACTATGGAGGTTCTTACAAGGTGACCAAAGGT
CTGGCTGAGATGTTTGGAGACCTACGAGTCCTTGATACCCCTATTGCTGAGAACTCATTC
ACCGGCATGGGAGTTGGAGCAGCGATGAAGGGGTTGAGGCCTGTTGTTGAAGGAATGAAC
ATGGGTTTCCTTCTCCTTGCTTACAACCAAATCTCAAACAACTGCGGAATGCTTCACTAC
ACCTCTGGTGGCCAGTTCAAAATCCCAATCGTGATCCGAGGTCCTGGTGGAGTTGGTCGC
CAGCTTGGTGCTGAGCACTCCCAGCGTCTGGAGTCTTACTTTCAGTCGATCCCCGGCCTC
CAGATGGTTGCTTGCTCTACCCCTTACAACGCCAAGGGTCTGATGAAAGCCGCCATAAGG
AGCGAGAACCCCGTGGTGCTATTCGAGCACGTCCTTCTGTACAACCTGAAGGAGAAAATT
CCCGACGAGGAATATGTTCTATGCCTGGAGGAGGCTGAGATGGTGCGTCCCGGAGAACAT
GTTACCATCCTCACATACTCGCGGATGAGGTACCATGTGATGCAGGCTGCGAAGACCCTG
GTGAACAAAGGGTATGATCCCGAGGTCATCGACATCAGGTCGTTGAAGCCATTTGACCTG
CACACCATAGGCAACTCTATCAAGAAGACCCACCGCGTGCTGATTGTGGAGGAGTGCATG
CGCACGGGCGGGATCGGCGCCAGCTTGAGATCGGCCATCATCGACAACTTCTGGGACTAC
CTTGACGCACCCATCATGTGCTTGTCGTCGCAGGATGTGCCGACGCCGTATGCTGCGCCT
CTGGAGGATGCCACCGTCGTGCAGCCTGCCCAGATTGTGGCTGCCGTTGAGCAAATATGC
CAGTAA

Peptide Sequence

PEP ID

Os03t0645100-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:24904283:24905460:1 gene:Os03g0645100 transcript:Os03t0645100-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-01);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-02);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-03)
Sequence

VLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGLAEMFGDLRVLDTPIAENSF
TGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLHYTSGGQFKIPIVIRGPGGVGR
QLGAEHSQRLESYFQSIPGLQMVACSTPYNAKGLMKAAIRSENPVVLFEHVLLYNLKEKI
PDEEYVLCLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDL
HTIGNSIKKTHRVLIVEECMRTGGIGASLRSAIIDNFWDYLDAPIMCLSSQDVPTPYAAP
LEDATVVQPAQIVAAVEQICQ

Transcript Sequence

Transcript ID

Os03t0645100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24904283:24905460:1 gene:Os03g0645100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-01);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-02);Similar to pyruvate dehydrogenase E1 component subunit beta. (Os03t0645100-03)
Sequence

GGTCTTACTGTTTGAGGCTCTTCGCGAGGCCTTGATAGAAGAGATGAAAGAAGATCCAAC
GGTATGTGTCTTTGGTGAAGATGTCGGTCACTATGGAGGTTCTTACAAGGTGACCAAAGG
TCTGGCTGAGATGTTTGGAGACCTACGAGTCCTTGATACCCCTATTGCTGAGAACTCATT
CACCGGCATGGGAGTTGGAGCAGCGATGAAGGGGTTGAGGCCTGTTGTTGAAGGAATGAA
CATGGGTTTCCTTCTCCTTGCTTACAACCAAATCTCAAACAACTGCGGAATGCTTCACTA
CACCTCTGGTGGCCAGTTCAAAATCCCAATCGTGATCCGAGGTCCTGGTGGAGTTGGTCG
CCAGCTTGGTGCTGAGCACTCCCAGCGTCTGGAGTCTTACTTTCAGTCGATCCCCGGCCT
CCAGATGGTTGCTTGCTCTACCCCTTACAACGCCAAGGGTCTGATGAAAGCCGCCATAAG
GAGCGAGAACCCCGTGGTGCTATTCGAGCACGTCCTTCTGTACAACCTGAAGGAGAAAAT
TCCCGACGAGGAATATGTTCTATGCCTGGAGGAGGCTGAGATGGTGCGTCCCGGAGAACA
TGTTACCATCCTCACATACTCGCGGATGAGGTACCATGTGATGCAGGCTGCGAAGACCCT
GGTGAACAAAGGGTATGATCCCGAGGTCATCGACATCAGGTCGTTGAAGCCATTTGACCT
GCACACCATAGGCAACTCTATCAAGAAGACCCACCGCGTGCTGATTGTGGAGGAGTGCAT
GCGCACGGGCGGGATCGGCGCCAGCTTGAGATCGGCCATCATCGACAACTTCTGGGACTA
CCTTGACGCACCCATCATGTGCTTGTCGTCGCAGGATGTGCCGACGCCGTATGCTGCGCC
TCTGGAGGATGCCACCGTCGTGCAGCCTGCCCAGATTGTGGCTGCCGTTGAGCAAATATG
CCAGTAATCTAGACAACCGTTTATACATTGTTCTTTGCGTGGAAAGTTTTTGTTCATCGT
TTTGCCCATGTAGCGAGGTATCCATTGTGGTATAGGCTTATTTATAGCCATTTTTATTCG
TATTCTGAGTTGTACTTTAGCTGCGAGGACATGCTCCACAGGATATATTCGTGCACTGTA
TCATGCTGAATTCTAGGATTTAAACATGTTTTTACTGC