Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0644400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:24850181:24854377:-1 gene:Os03g0644400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:proline transporter, proline transporter 2 description:Amino acid permease. (Os03t0644400-01);Similar to Amino acid permease. (Os03t0644400-02)
Sequence

ATGGATCAGCACCAGCTCGACGAGGAGAACCAGAGAGCCGCGCTCTTCCACTCCTCTGCC
CCATCTTCCTCTTTGGGAGCTGACGGGGAGGAGGAGAGGGAGACTGTGCCGCTGCTGTCC
TGCAAGATGGCCGACGATAAATCTGACACTGTCCAGGTCTCCGAGGATACGGCGCACCAG
ATTAGCATTGATCCCTGGTATCAAGTTGGATTCATTCTGACAACCGGGGTGAATAGTGCA
TATGTTCTGGGATATTCTGCATCAATCATGGTCCCTTTAGGCTGGATTGGTGGGACATGT
GGCTTGATTCTAGCTGCTGCAATATCCATGTATGCAAATGCTCTTCTTGCTCACCTTCAT
GAAGTTGGTGGCAAACGCCATATCAGATACAGAGATCTTGCTGGGCACATATATGGTAGA
AAAATGTATTCGCTTACATGGGCTCTGCAATATGTTAATCTATTCATGATCAACACTGGC
CTTATCATTTTAGCTGGTCAAGCCCTGAAGGCAATATATGTATTATTTAGGGACGATGGA
GTTCTAAAGCTACCCTACTGCATAGCATTATCTGGGTTTGTCTGTGCTCTTTTTGCCTTT
GGAATCCCTTATCTGTCTGCTCTCAGGATTTGGTTGGGATTATCAACAGTTTTCAGTCTC
ATCTATATAATGATAGCATTTGTCATGTCGCTTAGAGATGGGATTACCACACCTGCAAAG
GATTATACTATTCCTGGATCACATTCAGATAGAATCTTCACTACGATAGGTGCTGTAGCA
AACCTTGTGTTCGCTTACAACACTGGAATGCTCCCAGAAATTCAAGCAACCATAAGGCCT
CCTGTGGTCAAGAATATGGAGAAGGCTCTATGGTTCCAGTTCACTGTTGGTTCGTTGCCT
CTTTATGCTGTCACCTTTATGGGGTATTGGGCGTACGGGTCCTCAACATCAAGCTATCTA
CTGAATAGTGTGAAGGGACCAATTTGGATAAAAACTGTGGCAAATTTATCGGCGTTTCTT
CAGACTGTCATAGCATTACATATATTTGCAAGCCCAATGTACGAATTCTTGGACACAAGA
TTCGGCAGTGGACATGGTGGTCCTTTTGCAATCCACAACATAATGTTCAGAGTGGGTGTC
AGAGGAGGCTACCTGACCGTCAACACCTTGGTGGCCGCGATGCTCCCCTTCCTTGGCGAC
TTCATGAGCCTGACGGGTGCACTCAGCACCTTTCCCCTGACATTCGTTCTTGCAAATCAC
ATGTACCTCACGGTGAAGCAGAACAAGATGTCCATCTTCAGGAAATGCTGGCACTGGCTG
AACGTTGTTGGCTTCAGCTGCTTGTCCGTCGCAGCTGCGGTTGCTGCGGTGAGGCTAATC
ACGGTCGACTACAGTACATACCATTTGTTTGCTGATATGTGA

Peptide Sequence

PEP ID

Os03t0644400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:24850181:24854377:-1 gene:Os03g0644400 transcript:Os03t0644400-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:proline transporter, proline transporter 2 description:Amino acid permease. (Os03t0644400-01);Similar to Amino acid permease. (Os03t0644400-02)
Sequence

MDQHQLDEENQRAALFHSSAPSSSLGADGEEERETVPLLSCKMADDKSDTVQVSEDTAHQ
ISIDPWYQVGFILTTGVNSAYVLGYSASIMVPLGWIGGTCGLILAAAISMYANALLAHLH
EVGGKRHIRYRDLAGHIYGRKMYSLTWALQYVNLFMINTGLIILAGQALKAIYVLFRDDG
VLKLPYCIALSGFVCALFAFGIPYLSALRIWLGLSTVFSLIYIMIAFVMSLRDGITTPAK
DYTIPGSHSDRIFTTIGAVANLVFAYNTGMLPEIQATIRPPVVKNMEKALWFQFTVGSLP
LYAVTFMGYWAYGSSTSSYLLNSVKGPIWIKTVANLSAFLQTVIALHIFASPMYEFLDTR
FGSGHGGPFAIHNIMFRVGVRGGYLTVNTLVAAMLPFLGDFMSLTGALSTFPLTFVLANH
MYLTVKQNKMSIFRKCWHWLNVVGFSCLSVAAAVAAVRLITVDYSTYHLFADM

Transcript Sequence

Transcript ID

Os03t0644400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24850181:24854377:-1 gene:Os03g0644400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:proline transporter, proline transporter 2 description:Amino acid permease. (Os03t0644400-01);Similar to Amino acid permease. (Os03t0644400-02)
Sequence

GAACGGATGGCTCGGCCCGGGACTTATCGCGGGGGGAGGGGGATCGGATCCTAACGGGAA
AGACGGGAAAATCTCCGGCATCGCCGCCAATTTCTCCCGCACGCCGCGGCGCTGCTCCCC
CTCCCCTACCCACACACTCCACCACCATCACCACCACCACCACCACCCGCACGCGCGCCG
CAACAACCTCACTACTGCCTATCCTACCTATATGGCACGGGGTGTGGGTCCCTCCGATTC
CCCCGCCACGCCACTCCTCTCCCCTCCCCACGCAACCGCCTTCCTCCGCCGCCGCCGACG
CCGACGCCGACGCCGACCCCTTCTCCCAATCTGCGGATTCCAGCGGGGGTCCCCCCCCCC
TCCCACCGGCGGCGCCCGGTGGTCGTGGTCGTGGGGGAGGGGAGTCAACGAACGAGCCGA
GCCGCCCGCTTGCCGGAGCTCTCTATCTATCTCTCTATCTCTATCTCTATCCCTCCAGAT
TCCCTCCTCCATCGAATCTCTGATATTTGGAGGGAGCGACTCGACGCAGCATCGCATCGT
AAGGAAGGTCCCCTCCACTGTCGATGGATCAGCACCAGCTCGACGAGGAGAACCAGAGAG
CCGCGCTCTTCCACTCCTCTGCCCCATCTTCCTCTTTGGGAGCTGACGGGGAGGAGGAGA
GGGAGACTGTGCCGCTGCTGTCCTGCAAGATGGCCGACGATAAATCTGACACTGTCCAGG
TCTCCGAGGATACGGCGCACCAGATTAGCATTGATCCCTGGTATCAAGTTGGATTCATTC
TGACAACCGGGGTGAATAGTGCATATGTTCTGGGATATTCTGCATCAATCATGGTCCCTT
TAGGCTGGATTGGTGGGACATGTGGCTTGATTCTAGCTGCTGCAATATCCATGTATGCAA
ATGCTCTTCTTGCTCACCTTCATGAAGTTGGTGGCAAACGCCATATCAGATACAGAGATC
TTGCTGGGCACATATATGGTAGAAAAATGTATTCGCTTACATGGGCTCTGCAATATGTTA
ATCTATTCATGATCAACACTGGCCTTATCATTTTAGCTGGTCAAGCCCTGAAGGCAATAT
ATGTATTATTTAGGGACGATGGAGTTCTAAAGCTACCCTACTGCATAGCATTATCTGGGT
TTGTCTGTGCTCTTTTTGCCTTTGGAATCCCTTATCTGTCTGCTCTCAGGATTTGGTTGG
GATTATCAACAGTTTTCAGTCTCATCTATATAATGATAGCATTTGTCATGTCGCTTAGAG
ATGGGATTACCACACCTGCAAAGGATTATACTATTCCTGGATCACATTCAGATAGAATCT
TCACTACGATAGGTGCTGTAGCAAACCTTGTGTTCGCTTACAACACTGGAATGCTCCCAG
AAATTCAAGCAACCATAAGGCCTCCTGTGGTCAAGAATATGGAGAAGGCTCTATGGTTCC
AGTTCACTGTTGGTTCGTTGCCTCTTTATGCTGTCACCTTTATGGGGTATTGGGCGTACG
GGTCCTCAACATCAAGCTATCTACTGAATAGTGTGAAGGGACCAATTTGGATAAAAACTG
TGGCAAATTTATCGGCGTTTCTTCAGACTGTCATAGCATTACATATATTTGCAAGCCCAA
TGTACGAATTCTTGGACACAAGATTCGGCAGTGGACATGGTGGTCCTTTTGCAATCCACA
ACATAATGTTCAGAGTGGGTGTCAGAGGAGGCTACCTGACCGTCAACACCTTGGTGGCCG
CGATGCTCCCCTTCCTTGGCGACTTCATGAGCCTGACGGGTGCACTCAGCACCTTTCCCC
TGACATTCGTTCTTGCAAATCACATGTACCTCACGGTGAAGCAGAACAAGATGTCCATCT
TCAGGAAATGCTGGCACTGGCTGAACGTTGTTGGCTTCAGCTGCTTGTCCGTCGCAGCTG
CGGTTGCTGCGGTGAGGCTAATCACGGTCGACTACAGTACATACCATTTGTTTGCTGATA
TGTGAGGCTGGAAAGTGCAAGCATGCAGCCCTGGATCAGCTGTAAATTCGTCCTCTTCTT
TTTTATTTTTTTGGTTAGGGGATGCATGTAGGTCGATAGAATGATGGAGATTGCAATAAA
TAATTTGGCTAAAATGTTGTCCAGATTTGGTTGTTTGAGGTGCAAGATGTTTGCCTCAAA
ACGTACCGCTATGGTTCACTTTTTAAGAACTGTACTGCTACCTCTGTTTGCGGAGATTTT
TGTCTGCAGGCATGCAGGATGAATATTATTCAAGTGCTCTAATAGTTTGATCTCAGC