Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0644200-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:24843343:24845622:-1 gene:Os03g0644200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0644200-01)
Sequence

ATGCTGTTCTGCTGCCCTGCTTCTCCTCCCCCTCCAATCCAAGCTTCTTCTCTCCCGCCG
TTCCGGACGAACAGCTTGTCTCCGACCGTACGTGGCGGGAATGCCGCGCCACGACGCCCT
CTCGCGCGGTCTTTCTCGGCCAAGAACCGGTCCCCGCGAGCGCGGAACCGCCACGCGGCA
GCAGGTGATGGTGGTGGTTATGGGTCTCCGGAGCAAGAGGGGCGTGGGGAATCGTCCCTC
CCGAACGCCGAGGCGCTCGCGTCCTCGCTGCGTGATTGCGGCGGCGCGGACGGCGTCCGG
CGGGTGCACGCGGTTGCTGTCCGGTCGCTCGACAGCCTGGGGACGTTCGTCGCCAACAAT
TTGATCAGCGCGTATGCCAGGTTCGACGAGGTTTCGGATGCCAGGGAGGTGTTCGACGAA
ATGCCGGAGAGGAGTGTTGTGTCGTGGACGGCGATGATGAATGTGTATCTGAAACTAGGA
CACTACGGCGAGGTTGTGAGGCTCTTCTTTGATATGGTGGGAAGCGGAGTGCAAGGTAAC
AGCTTGACTTTTGTTTGCTTGCTGAAATCATGCGGCGAGCGTTGCGATGCTAAGCTAGGG
CAGCAGGTCCACTGTTGTATTGTCAAAGGTGGGTGGAGCAATGTGATAGTGGACAGTGCT
ATTGCACACTTCTATGCTCAATGCGGTGATGTTGCTAGTGCTTCAGCCATATTTGATAAG
ATGGCCTATCGTGATGTCATCTCATGGACAACAATGATCACAGCTTATGTGCAGCATGGG
CATGGGGGCCAAGCTCTTAGAATGTTTTCAGAAATGGTGTCAGAAGGATTTCGACCAAAT
GAGTTCACTGTGTGCAGTGTCCTCAAGGCTTGTGCAGAAGAGAAAGCTGTGAGATTTGGG
AAGCAGCTGCATTGTGCTGTTTTGAAGAAAATGTACAAAAATGACATCCATATCGGCAGT
GCCCTTGTCACCATGTATGCTAGATGCGGTGAAGTTTTTGATGCTCAGGCAGTGTTTGAT
ATGATGCCACGAAGAAACACTATTACATGGACTTCTATGATCTCTGGCTATGCACAAAGT
GGCCATGGAGAAAAGGCTATCTTGTTGTTCAGAAAGATGAAGATGCGCCGAGTATTTGTT
AACAACCTCACCATTGTTGGTCTCCTAAGTGCCTGTGGCTCCTTACAGTCGCCTTATCTT
GGAAAGGAATTGCATGCTCAGATAATAAAGAATTCTATGGAAGAAAATCTTCAAATTGGG
AGTACACTTGTTTGGTTCTACTGTAAATGTGGAGAGTACACATATGCTGCAAGAATTCTT
GAAGCGATGCCTGACCGTGATGCTATCTCATGGACTGCTCTGATTTCCGGCTACAATAAT
CTAGGTCATAATGTTGAAGCACTTAAATCATTAGATGATATGCTATGGGATGGTGTAAAA
CCAAATACATACACTTACTCCTCGGCTCTGAAAGCTTGTGCAAAATTGGAGGCTCTGCAA
TATGGAAGGAAGATCCATGGTTTTGTTAACAAGACTCAAGATTTCTCCAATGTGTTTGTG
GGAAGCTCACTTATCGATATGTACATGAGGTGTGGAAAAGTCGACGAAGCCCGAAGTGTC
TTTGATGCCATGCCAGAACATAACCTTGTGACATGGAAAGTGATTATTACAGGATTTGCT
CAGAATGGCCTCTGTGAAGAGGCTTTGAAGTACATGTACCTAATGCAACAAGAAGGGCAT
GAGGTTGATGATTTTGTGCTCTCAACAGTTCTGACATCATGTGGAGATCTTCAATGGAAA
TCCATCTCCTTCTCTGACTCAGTTGCTGGTTCAGTTTCAGCTAGGCAGTAG

Peptide Sequence

PEP ID

Os03t0644200-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:24843343:24845622:-1 gene:Os03g0644200 transcript:Os03t0644200-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0644200-01)
Sequence

MLFCCPASPPPPIQASSLPPFRTNSLSPTVRGGNAAPRRPLARSFSAKNRSPRARNRHAA
AGDGGGYGSPEQEGRGESSLPNAEALASSLRDCGGADGVRRVHAVAVRSLDSLGTFVANN
LISAYARFDEVSDAREVFDEMPERSVVSWTAMMNVYLKLGHYGEVVRLFFDMVGSGVQGN
SLTFVCLLKSCGERCDAKLGQQVHCCIVKGGWSNVIVDSAIAHFYAQCGDVASASAIFDK
MAYRDVISWTTMITAYVQHGHGGQALRMFSEMVSEGFRPNEFTVCSVLKACAEEKAVRFG
KQLHCAVLKKMYKNDIHIGSALVTMYARCGEVFDAQAVFDMMPRRNTITWTSMISGYAQS
GHGEKAILLFRKMKMRRVFVNNLTIVGLLSACGSLQSPYLGKELHAQIIKNSMEENLQIG
STLVWFYCKCGEYTYAARILEAMPDRDAISWTALISGYNNLGHNVEALKSLDDMLWDGVK
PNTYTYSSALKACAKLEALQYGRKIHGFVNKTQDFSNVFVGSSLIDMYMRCGKVDEARSV
FDAMPEHNLVTWKVIITGFAQNGLCEEALKYMYLMQQEGHEVDDFVLSTVLTSCGDLQWK
SISFSDSVAGSVSARQ

Transcript Sequence

Transcript ID

Os03t0644200-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24843343:24845622:-1 gene:Os03g0644200 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0644200-01)
Sequence

GAGCTCACAAAAATCGCTCGCCCCCCTCCACCTCCACCTCGCTCCCGCCGCCTCCACCAC
CCATCTCCGCCCTCGTCCGCTCGCCGGCAAGCCGCTGCTGCTGCAGCTGCTTGCTCGTCT
CGTCTCCCCATCCCTGGGCGGGGCGCGGTGGGAGGGGGGCGGGGGACTCGCCACCGCTCT
CCGTTCCGTGGGTGTCTCTGCACTCTGCTTTGCTCCTCTTCTTCCCCCCCTCTGGTTCCA
CCCCCGCGCGGCGGAGCGCGGGGGAAGGGATCCACAGATGCTGTTCTGCTGCCCTGCTTC
TCCTCCCCCTCCAATCCAAGCTTCTTCTCTCCCGCCGTTCCGGACGAACAGCTTGTCTCC
GACCGTACGTGGCGGGAATGCCGCGCCACGACGCCCTCTCGCGCGGTCTTTCTCGGCCAA
GAACCGGTCCCCGCGAGCGCGGAACCGCCACGCGGCAGCAGGTGATGGTGGTGGTTATGG
GTCTCCGGAGCAAGAGGGGCGTGGGGAATCGTCCCTCCCGAACGCCGAGGCGCTCGCGTC
CTCGCTGCGTGATTGCGGCGGCGCGGACGGCGTCCGGCGGGTGCACGCGGTTGCTGTCCG
GTCGCTCGACAGCCTGGGGACGTTCGTCGCCAACAATTTGATCAGCGCGTATGCCAGGTT
CGACGAGGTTTCGGATGCCAGGGAGGTGTTCGACGAAATGCCGGAGAGGAGTGTTGTGTC
GTGGACGGCGATGATGAATGTGTATCTGAAACTAGGACACTACGGCGAGGTTGTGAGGCT
CTTCTTTGATATGGTGGGAAGCGGAGTGCAAGGTAACAGCTTGACTTTTGTTTGCTTGCT
GAAATCATGCGGCGAGCGTTGCGATGCTAAGCTAGGGCAGCAGGTCCACTGTTGTATTGT
CAAAGGTGGGTGGAGCAATGTGATAGTGGACAGTGCTATTGCACACTTCTATGCTCAATG
CGGTGATGTTGCTAGTGCTTCAGCCATATTTGATAAGATGGCCTATCGTGATGTCATCTC
ATGGACAACAATGATCACAGCTTATGTGCAGCATGGGCATGGGGGCCAAGCTCTTAGAAT
GTTTTCAGAAATGGTGTCAGAAGGATTTCGACCAAATGAGTTCACTGTGTGCAGTGTCCT
CAAGGCTTGTGCAGAAGAGAAAGCTGTGAGATTTGGGAAGCAGCTGCATTGTGCTGTTTT
GAAGAAAATGTACAAAAATGACATCCATATCGGCAGTGCCCTTGTCACCATGTATGCTAG
ATGCGGTGAAGTTTTTGATGCTCAGGCAGTGTTTGATATGATGCCACGAAGAAACACTAT
TACATGGACTTCTATGATCTCTGGCTATGCACAAAGTGGCCATGGAGAAAAGGCTATCTT
GTTGTTCAGAAAGATGAAGATGCGCCGAGTATTTGTTAACAACCTCACCATTGTTGGTCT
CCTAAGTGCCTGTGGCTCCTTACAGTCGCCTTATCTTGGAAAGGAATTGCATGCTCAGAT
AATAAAGAATTCTATGGAAGAAAATCTTCAAATTGGGAGTACACTTGTTTGGTTCTACTG
TAAATGTGGAGAGTACACATATGCTGCAAGAATTCTTGAAGCGATGCCTGACCGTGATGC
TATCTCATGGACTGCTCTGATTTCCGGCTACAATAATCTAGGTCATAATGTTGAAGCACT
TAAATCATTAGATGATATGCTATGGGATGGTGTAAAACCAAATACATACACTTACTCCTC
GGCTCTGAAAGCTTGTGCAAAATTGGAGGCTCTGCAATATGGAAGGAAGATCCATGGTTT
TGTTAACAAGACTCAAGATTTCTCCAATGTGTTTGTGGGAAGCTCACTTATCGATATGTA
CATGAGGTGTGGAAAAGTCGACGAAGCCCGAAGTGTCTTTGATGCCATGCCAGAACATAA
CCTTGTGACATGGAAAGTGATTATTACAGGATTTGCTCAGAATGGCCTCTGTGAAGAGGC
TTTGAAGTACATGTACCTAATGCAACAAGAAGGGCATGAGGTTGATGATTTTGTGCTCTC
AACAGTTCTGACATCATGTGGAGATCTTCAATGGAAATCCATCTCCTTCTCTGACTCAGT
TGCTGGTTCAGTTTCAGCTAGGCAGTAGATTAGTTCTCCCGTGGCAAAGAAGCTAGCACT
TCTGTACAGTTACAGAGATTTGTTATTGTGCAAGATCAGAAGACATGTAGCACAAAAAGG
TAACTCAAGGAGTGCATACGTGTATATGTACTTTTAAGAGTACCACTACCTTCACTAACC