Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0644000-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:24835605:24841302:1 gene:Os03g0644000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 6B description:ATG6/Beclin-1 protein, Abiotic stresses (heat,cold and drought) and hormone (abscisic acid) response (Os03t0644000-01)
Sequence	ATGAAGCCCCCTGCATCCTCCGCCGCCGCTGCCGGCGACAAGGGCGGCGGGGTCGACCCG TCTCTGCCGCGGTTCAAGTGCCAGGAGTGCCAACGCGCGCTCGTCGTCGTCGGCGTCGAG TCCTTCACCGATAAGCTCCCCGCTCATGCCGTCTCCGGTATGAACGTGTCCTCTGTTCAG GGCAGCGTTATGGGTGCTAGCAGGATGGACAACTCTTATGTCGTGCTATCGAAGCAAAAT AGATCACATAGCCATGGAATTCCCCCACGCCCGCCAAGCGCAGGGATCCCGCGTGCCGAG CCGAACCAACCAACAAGAGCAATGGAGGGATCATATATAGTGCTTCCACCTGCTGCCGCT TCCATATACAAGACATCTGCCTCTGAAGGAGGTGGTGCGCAGTTGTCACCAACAAGTATG AACCCCGGTAGCCCTTTACCAGGAAATAATTTTCACTCTAGCGTGACTGTATTAAAACGG GCATTTGAGATTGCTACATCACAAACACAGATTGAACAGCCACTCTGTCTGGACTGTATG AGGTTGCTGTCTGATAAAATGGAGAAGGAAATTGAAGATGTTAATACTGACAATAAAGCT TATGAGGCCTGTCTTCAACGTCTGGAGCAGGAAACCTATAACATCCTCAGTGAAACTGAC TTTCAGAAGGAGAGACAAAAGATTGAGGAAGAAGAAAAGAAACTTAAAGCTGCAATTGAG GAAGCTGAAAAGCAATATTCAGAAATTTGTTCCGAGATGAAGTGCCTTGAAACAAAATCT AAACAGTTCGAAGAACTGGAAGAAAGGTATTGCCATGATCTCAATAGCTTTCAGTTTCAG TGGATATCTCACCAGGAAGAAAGAGATGCGGTTTTGGCCAAGATAGAAGTTTCGCAGGTT CATCTAGAATTGTTAAAGCGTACAAATGTTCTCAATGATGCATTCTATATTTCACATGAT GGGGTGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAGGTGGAG TGGGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAG TACTTCTTCCCAAAATTTGAATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAA GTTACAGACATCAACCAAAATACATATGAACTGTTCGGTCCTGTGAATTTATTCTGGAGT ACCCGATTTGACAAAGCCATGACATGGTTTCTGACTTGCTTGCAAGAATTTGCTGATTTT GCTGTTAGTTTGGATAAAGAGAACAATGTACCACCTGACAAGTCATTGAAGCTCCCATAT AAGATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAAACTTGAC AATTGGACAAAAGCACTAAAATACATGCTGTGCAACTTGAAGTGGGTTCTCTACTGGTTT ATCGGCAATACAAGTTTTGCCCCACCCTCTGGATCTTTACACGTAGCACAGTCTTCCAAG GGATGA

Peptide Sequence

PEP ID	Os03t0644000-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:24835605:24841302:1 gene:Os03g0644000 transcript:Os03t0644000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 6B description:ATG6/Beclin-1 protein, Abiotic stresses (heat,cold and drought) and hormone (abscisic acid) response (Os03t0644000-01)
Sequence	MKPPASSAAAAGDKGGGVDPSLPRFKCQECQRALVVVGVESFTDKLPAHAVSGMNVSSVQ GSVMGASRMDNSYVVLSKQNRSHSHGIPPRPPSAGIPRAEPNQPTRAMEGSYIVLPPAAA SIYKTSASEGGGAQLSPTSMNPGSPLPGNNFHSSVTVLKRAFEIATSQTQIEQPLCLDCM RLLSDKMEKEIEDVNTDNKAYEACLQRLEQETYNILSETDFQKERQKIEEEEKKLKAAIE EAEKQYSEICSEMKCLETKSKQFEELEERYCHDLNSFQFQWISHQEERDAVLAKIEVSQV HLELLKRTNVLNDAFYISHDGVIGTINNFRLGRLPNVQVEWDEINAAWGQAALLLHTMAQ YFFPKFEYRIKIHPMGSYPKVTDINQNTYELFGPVNLFWSTRFDKAMTWFLTCLQEFADF AVSLDKENNVPPDKSLKLPYKIEGDKVGSYTIFLSFNKLDNWTKALKYMLCNLKWVLYWF IGNTSFAPPSGSLHVAQSSKG

Transcript Sequence

Transcript ID	Os03t0644000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:24835605:24841302:1 gene:Os03g0644000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 6B description:ATG6/Beclin-1 protein, Abiotic stresses (heat,cold and drought) and hormone (abscisic acid) response (Os03t0644000-01)
Sequence	ACACGCACGCTACCTCTCTCTCTCTCGACTCCCGAGCAGGCGACTCCTCCCTCCCCGGCG ATTCCGCCGCTCCGACCGCCGTCTCTCCGCGCCGCGCACGTGAGCCCCCCGTCGCCTTCC TCGCACGGACTCTGCCCCCGCCGGAATCTCATCTCCTACGCCTCAAACCCCCACCCCGCG ACGCCGCCTAGCCGCGATTTTCCTGCGGGGTACTCCACCGCCCCTGGAGGCTGGAGCCGT GCTCTCCGGATCGGCGTTGGATTGGTAGCGCTCGCGTCCTGCTCTGTCGGGCGGCGATAT GAAGCCCCCTGCATCCTCCGCCGCCGCTGCCGGCGACAAGGGCGGCGGGGTCGACCCGTC TCTGCCGCGGTTCAAGTGCCAGGAGTGCCAACGCGCGCTCGTCGTCGTCGGCGTCGAGTC CTTCACCGATAAGCTCCCCGCTCATGCCGTCTCCGGTATGAACGTGTCCTCTGTTCAGGG CAGCGTTATGGGTGCTAGCAGGATGGACAACTCTTATGTCGTGCTATCGAAGCAAAATAG ATCACATAGCCATGGAATTCCCCCACGCCCGCCAAGCGCAGGGATCCCGCGTGCCGAGCC GAACCAACCAACAAGAGCAATGGAGGGATCATATATAGTGCTTCCACCTGCTGCCGCTTC CATATACAAGACATCTGCCTCTGAAGGAGGTGGTGCGCAGTTGTCACCAACAAGTATGAA CCCCGGTAGCCCTTTACCAGGAAATAATTTTCACTCTAGCGTGACTGTATTAAAACGGGC ATTTGAGATTGCTACATCACAAACACAGATTGAACAGCCACTCTGTCTGGACTGTATGAG GTTGCTGTCTGATAAAATGGAGAAGGAAATTGAAGATGTTAATACTGACAATAAAGCTTA TGAGGCCTGTCTTCAACGTCTGGAGCAGGAAACCTATAACATCCTCAGTGAAACTGACTT TCAGAAGGAGAGACAAAAGATTGAGGAAGAAGAAAAGAAACTTAAAGCTGCAATTGAGGA AGCTGAAAAGCAATATTCAGAAATTTGTTCCGAGATGAAGTGCCTTGAAACAAAATCTAA ACAGTTCGAAGAACTGGAAGAAAGGTATTGCCATGATCTCAATAGCTTTCAGTTTCAGTG GATATCTCACCAGGAAGAAAGAGATGCGGTTTTGGCCAAGATAGAAGTTTCGCAGGTTCA TCTAGAATTGTTAAAGCGTACAAATGTTCTCAATGATGCATTCTATATTTCACATGATGG GGTGATCGGAACAATAAACAACTTTCGTCTTGGCCGCCTTCCTAATGTACAGGTGGAGTG GGATGAGATAAATGCTGCTTGGGGCCAGGCTGCTCTTCTGTTGCATACCATGGCTCAGTA CTTCTTCCCAAAATTTGAATACCGGATCAAAATTCACCCTATGGGAAGCTATCCAAAAGT TACAGACATCAACCAAAATACATATGAACTGTTCGGTCCTGTGAATTTATTCTGGAGTAC CCGATTTGACAAAGCCATGACATGGTTTCTGACTTGCTTGCAAGAATTTGCTGATTTTGC TGTTAGTTTGGATAAAGAGAACAATGTACCACCTGACAAGTCATTGAAGCTCCCATATAA GATTGAAGGTGACAAAGTAGGGAGCTATACAATCTTCTTAAGTTTCAATAAACTTGACAA TTGGACAAAAGCACTAAAATACATGCTGTGCAACTTGAAGTGGGTTCTCTACTGGTTTAT CGGCAATACAAGTTTTGCCCCACCCTCTGGATCTTTACACGTAGCACAGTCTTCCAAGGG ATGAAGTCACTGGCTTGTGATGCTGATTATAAGCGCATATTGGCAAATGGCATTGACTAG GCTCGTTTGTAATTTACAGTAGTACATACAGCTAGTTTTTTTTTTCCTTTTGGCCGCCTT CAGTTGTACTTCCTCCGTTTCACAATGTAAGTCATCATAGCATTTCCCATATTTATAATG ATGTTAATGAATCTATATAGATATATATGTCTAGATTTATTAACGTCAATATGAATATAG GAAATGCTAGAATGACTTACATTGTGAAACGGGGGGAGTATATATGGTTGAAATCTGCAC AGGAGAAATTGCAGATGATGGTGCAACTCAGCTTATAGTCGGCTTGATCATTATTCATGT AATTATTTAGCCATGTGTGACAGAAAATGCGAGTGATACGAGATCCTAGAGCAATTCATG CAGCTCTGGTTAGGTGAGTTTGTGATGGTGCAATCAACAGCATATCCAATCAACATTAAG ATTTATAAGAGATGAAATGTCTTCAGC