Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0640000-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:24616417:24617859:-1 gene:Os03g0640000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Patatin-related phospholipase A III beta description:Patatin family protein. (Os03t0640000-00)
Sequence

ATGGCGAGCTCGCCGATGGCCATGGACGCGGACAAGCTCAGCTACGAGATCTTCTCCCTG
CTGGAGAGCAAGTTCCTCTTCGGCGCCGGCGGCGGCGGGTGCCTGTCGTCGGGGCCGTGC
ACGCCGGCGAGGCCGTTTCTTGGCGGCGGTGGCGGCATGGACGGGCGGGTGCGGGTGCTG
GCCATCGACGGGTGCGGCTCGTCGGGCGCCGGGGACGCGCTGCTCGCCGCGGCGGCGCTC
GCGCGGCTGGAGGCCGGGCTGCGGAAGCGAACCGGGGACTCCGACGCCCGCGTCGCGGAT
TTCTTCGACGTCGCGGCGGGCGCCGGCGCCGGTGGGGTGCTCGCGGCGATGCTGTTCTTG
AGGGGCCCCGACGGGAGGCCGAGGTACACGGCGGAGGAGGCGCTTGAGTTCGTGGCTGCT
AGCGTCGGGAGGGACTGGGCCGGCCGGCGCGGGCGGTGGGCGCGGCTGTTCCGCGGCGGC
GCGCGGGGGGCGGAGAGGTCGTTCCGGCGGGTGTTCGGCGACGCCACGCTCAAGGACACC
GTCGCGCCGCTGCTCGTCCCGTGCTACGACCTCGCCACCGCCGCGCCTTTCATGTTCTCG
CGCGCCGACGCCGTCGAGAGCGACAGCTACGACTTCGCCCTCCGCGACGTCTGCGCGGCC
ACCTGCGCCGCCGGGAGCACGGCCGCCGCCGTCAGGTCGGTGGACGGGCGCACCGCCATC
GCCGCGGCTTCCGGCGGCGTGGCGGCCATGGGCAACCCGGCCGCGGCGGCCATCACGCAC
GTGCTCCACAACAAGCAGGAGTTCCCCCTCGCCACCACCGTCGACGACATCCTCGTCCTC
TCCATCGGCACCGGCGCCTCCACCTCCGCCACCGCGACGCCGATGCCCACGCGCTCCCCG
TCGCCGCGCGAGATGGCGCGCGTCACCGCCGAGGGCGTGGCGGACATGGTCGACGAGTCC
GTCGCCATGGCGTTCGGCCACACGAGCGGGAGCAGCAGCAACTACGTGCGCATCCAGGCC
AGCAAGGCGGCGACCGCGCTCCACGGCGCCGCCGCCGCGGGCGCGATGCTGTCGCAGCGG
AACGTGGAGTCCGTGCTGTTCCGCGGGCGGAGGATGTCGGAGAGGACGAACGCCGAGAAG
GTGGACGCCGCGGCGGCGGAGGTGGTGAAGGAGCACGAGCGGCGGCGGCGCAGCCCGCTG
CCGAACGTGGTGATCAAGCAGGTGGGCACGCCGCGGGTATCGTCGGCGACCACGGCGTCG
TCGGGGACGGCGAGGACGGCGGCGTCGACGTTGGCGTCGCCGGCGTCGTACGGCTCCCGC
CAATAG

Peptide Sequence

PEP ID

Os03t0640000-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:24616417:24617859:-1 gene:Os03g0640000 transcript:Os03t0640000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Patatin-related phospholipase A III beta description:Patatin family protein. (Os03t0640000-00)
Sequence

MASSPMAMDADKLSYEIFSLLESKFLFGAGGGGCLSSGPCTPARPFLGGGGGMDGRVRVL
AIDGCGSSGAGDALLAAAALARLEAGLRKRTGDSDARVADFFDVAAGAGAGGVLAAMLFL
RGPDGRPRYTAEEALEFVAASVGRDWAGRRGRWARLFRGGARGAERSFRRVFGDATLKDT
VAPLLVPCYDLATAAPFMFSRADAVESDSYDFALRDVCAATCAAGSTAAAVRSVDGRTAI
AAASGGVAAMGNPAAAAITHVLHNKQEFPLATTVDDILVLSIGTGASTSATATPMPTRSP
SPREMARVTAEGVADMVDESVAMAFGHTSGSSSNYVRIQASKAATALHGAAAAGAMLSQR
NVESVLFRGRRMSERTNAEKVDAAAAEVVKEHERRRRSPLPNVVIKQVGTPRVSSATTAS
SGTARTAASTLASPASYGSRQ

Transcript Sequence

Transcript ID

Os03t0640000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24616417:24617859:-1 gene:Os03g0640000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Patatin-related phospholipase A III beta description:Patatin family protein. (Os03t0640000-00)
Sequence

GCAATGGCGAGCTCGCCGATGGCCATGGACGCGGACAAGCTCAGCTACGAGATCTTCTCC
CTGCTGGAGAGCAAGTTCCTCTTCGGCGCCGGCGGCGGCGGGTGCCTGTCGTCGGGGCCG
TGCACGCCGGCGAGGCCGTTTCTTGGCGGCGGTGGCGGCATGGACGGGCGGGTGCGGGTG
CTGGCCATCGACGGGTGCGGCTCGTCGGGCGCCGGGGACGCGCTGCTCGCCGCGGCGGCG
CTCGCGCGGCTGGAGGCCGGGCTGCGGAAGCGAACCGGGGACTCCGACGCCCGCGTCGCG
GATTTCTTCGACGTCGCGGCGGGCGCCGGCGCCGGTGGGGTGCTCGCGGCGATGCTGTTC
TTGAGGGGCCCCGACGGGAGGCCGAGGTACACGGCGGAGGAGGCGCTTGAGTTCGTGGCT
GCTAGCGTCGGGAGGGACTGGGCCGGCCGGCGCGGGCGGTGGGCGCGGCTGTTCCGCGGC
GGCGCGCGGGGGGCGGAGAGGTCGTTCCGGCGGGTGTTCGGCGACGCCACGCTCAAGGAC
ACCGTCGCGCCGCTGCTCGTCCCGTGCTACGACCTCGCCACCGCCGCGCCTTTCATGTTC
TCGCGCGCCGACGCCGTCGAGAGCGACAGCTACGACTTCGCCCTCCGCGACGTCTGCGCG
GCCACCTGCGCCGCCGGGAGCACGGCCGCCGCCGTCAGGTCGGTGGACGGGCGCACCGCC
ATCGCCGCGGCTTCCGGCGGCGTGGCGGCCATGGGCAACCCGGCCGCGGCGGCCATCACG
CACGTGCTCCACAACAAGCAGGAGTTCCCCCTCGCCACCACCGTCGACGACATCCTCGTC
CTCTCCATCGGCACCGGCGCCTCCACCTCCGCCACCGCGACGCCGATGCCCACGCGCTCC
CCGTCGCCGCGCGAGATGGCGCGCGTCACCGCCGAGGGCGTGGCGGACATGGTCGACGAG
TCCGTCGCCATGGCGTTCGGCCACACGAGCGGGAGCAGCAGCAACTACGTGCGCATCCAG
GCCAGCAAGGCGGCGACCGCGCTCCACGGCGCCGCCGCCGCGGGCGCGATGCTGTCGCAG
CGGAACGTGGAGTCCGTGCTGTTCCGCGGGCGGAGGATGTCGGAGAGGACGAACGCCGAG
AAGGTGGACGCCGCGGCGGCGGAGGTGGTGAAGGAGCACGAGCGGCGGCGGCGCAGCCCG
CTGCCGAACGTGGTGATCAAGCAGGTGGGCACGCCGCGGGTATCGTCGGCGACCACGGCG
TCGTCGGGGACGGCGAGGACGGCGGCGTCGACGTTGGCGTCGCCGGCGTCGTACGGCTCC
CGCCAATAGCTGGAGTACCTTAGAGCTGTGACGTGACGTGACGCGGATGCGGGTGTGCAC
GTAGATGCATGACGCTGAGGCTTACTGACGAGAGACGAGAGCGATGTGTTGTTTTGTTCG
TTT