Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0639800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:24596843:24600376:-1 gene:Os03g0639800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VPS2 component of ESCRT-III complex, ESCRT-III complex VPS2 component description:Snf7 family protein. (Os03t0639800-01)
Sequence

ATGAACATCTTCAAGAAGAAGGTCGACCCCAAAGAGGCTCTCAGGACCAGCAAGAGGGAG
ATGTCAGTTGCTACACGGGGAGTTGAGAGAGAGATTGGCTCCCTGCAAATGGAGGAGAAG
AAACTAGTTGCTGAGATTAAGAAAACTGCTAAGACAGGAAATGAGGCTGCGACCAAAATC
CTAGCTCGGCAACTTGTGAGGCTTAGGCAACAAATTGTCAATTTGCAAGGCACGCGGGCA
CAAATACGTGGAGTTGCTACTCATACACAGGCAATGTACGCAGGCACTTCAATATCTGCA
GGAATGAAAGGTGCAAGCAAAGCAATGGCAGCAATGAATAAGCAAATGGAACCAACAAAA
CAGATCAAGGTTATGAGAGAATTCCAGAAACAATCAAATCAGTTGGACATGACGCTTGAA
ATGATGTCCGATGCTATAGATGAAACACTTGATAAGGACGAGGCAGAAGAGGAAACAGAA
GAACTTACTAACCAGGTTCTTGATGAGATTGGTGTTGATGTGGCTTCTCAGCTGTCTTCA
GCTCCTAAAGGTCGTATTGCGGCGAGCAACAGGAAAGCTGAGAGCAACCAAGCACGAAAT
GCCGCTCCCCCCAGAAATAACGTGGAGCCTGAATCCTCTGCTGAAGTTGACGACCTGGAG
AGGAGACTGGCTTCACTTCGCCGCATCTGA

Peptide Sequence

PEP ID

Os03t0639800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:24596843:24600376:-1 gene:Os03g0639800 transcript:Os03t0639800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VPS2 component of ESCRT-III complex, ESCRT-III complex VPS2 component description:Snf7 family protein. (Os03t0639800-01)
Sequence

MNIFKKKVDPKEALRTSKREMSVATRGVEREIGSLQMEEKKLVAEIKKTAKTGNEAATKI
LARQLVRLRQQIVNLQGTRAQIRGVATHTQAMYAGTSISAGMKGASKAMAAMNKQMEPTK
QIKVMREFQKQSNQLDMTLEMMSDAIDETLDKDEAEEETEELTNQVLDEIGVDVASQLSS
APKGRIAASNRKAESNQARNAAPPRNNVEPESSAEVDDLERRLASLRRI

Transcript Sequence

Transcript ID

Os03t0639800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24596843:24600376:-1 gene:Os03g0639800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:VPS2 component of ESCRT-III complex, ESCRT-III complex VPS2 component description:Snf7 family protein. (Os03t0639800-01)
Sequence

CCTTCCCGTTGGGCTCGCGCGGCGCCGTCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTACACTGCTCACGCCTCTCTCTCTCTCTGCTCCCAAATCTGCGTGGGAGAGAGAGAGA
GAGAGAAATCCAGTGGGGGGAGGGATTGGTCTCTGGAGGGGATCTAGCAGCAGCAGCAGC
AGCAGCCATGAACATCTTCAAGAAGAAGGTCGACCCCAAAGAGGCTCTCAGGACCAGCAA
GAGGGAGATGTCAGTTGCTACACGGGGAGTTGAGAGAGAGATTGGCTCCCTGCAAATGGA
GGAGAAGAAACTAGTTGCTGAGATTAAGAAAACTGCTAAGACAGGAAATGAGGCTGCGAC
CAAAATCCTAGCTCGGCAACTTGTGAGGCTTAGGCAACAAATTGTCAATTTGCAAGGCAC
GCGGGCACAAATACGTGGAGTTGCTACTCATACACAGGCAATGTACGCAGGCACTTCAAT
ATCTGCAGGAATGAAAGGTGCAAGCAAAGCAATGGCAGCAATGAATAAGCAAATGGAACC
AACAAAACAGATCAAGGTTATGAGAGAATTCCAGAAACAATCAAATCAGTTGGACATGAC
GCTTGAAATGATGTCCGATGCTATAGATGAAACACTTGATAAGGACGAGGCAGAAGAGGA
AACAGAAGAACTTACTAACCAGGTTCTTGATGAGATTGGTGTTGATGTGGCTTCTCAGCT
GTCTTCAGCTCCTAAAGGTCGTATTGCGGCGAGCAACAGGAAAGCTGAGAGCAACCAAGC
ACGAAATGCCGCTCCCCCCAGAAATAACGTGGAGCCTGAATCCTCTGCTGAAGTTGACGA
CCTGGAGAGGAGACTGGCTTCACTTCGCCGCATCTGAGCAGCTGATAAATATATAGTGCA
TCTATAATTCTATATGTAAATTTGTTTCACTCAACATAGCTTGTCTGAATATGTGCGAGT
AGAGTATTGTAGGCAAACAACAAGATTTAAATAACATAATTGAACCTTCGGATTTTCTAT
GG