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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0639600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:24574540:24579212:-1 gene:Os03g0639600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsLSD2 description:Similar to Zinc-finger protein Lsd1. (Os03t0639600-01)
Sequence

ATGCAGAGCCAGATCGTGTGCCATGGCTGCCGGAGCGTGCTGCGGTACCCGAGCGGGGCG
CCCAGCGTGTGCTGCGCGCTCTGCCAGGCCATCACCACCGTGCCGCCCCCTGCCCCAGTA
ATGGAAATGGCTCATCTAATATGTGGTGGTTGCCGAACATTGCTGATGTATACTCGCAAT
GCGGACACTGTGAGATGTTCATGTTGCAGTACAGTCAATCTTGTTAGACCAGTGAATAAT
ATAGCACATGTGAGCTGTGGCCAGTGCCGGACGACTTTGATGTATCCATATGGCGCACCT
TCTGTCAAATGTGCCATATGCCATTATATCACAAACACCGGAATGAATACTGTGGCACCC
ACGCCATCTCCAATGCCTACATCAAGTGGATCTTCATATAATGCCCCCCCAAGTGGATCT
TCATATAATGCCCCCCCACCAACTTCAGCTCCCACATCTCGACCCCAGAATGTAACCGTT
GTTGTCGAGAACCCTATGACTGTTGATGAAAAGGGTAAACTGGTTAGCAATGTTGTAGTT
GGAGTTACAACTGGGAAATAG

Peptide Sequence

PEP ID

Os03t0639600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:24574540:24579212:-1 gene:Os03g0639600 transcript:Os03t0639600-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsLSD2 description:Similar to Zinc-finger protein Lsd1. (Os03t0639600-01)
Sequence

MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN
ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP
TPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVVV
GVTTGK

Transcript Sequence

Transcript ID

Os03t0639600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24574540:24579212:-1 gene:Os03g0639600 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:OsLSD2 description:Similar to Zinc-finger protein Lsd1. (Os03t0639600-01)
Sequence

CTCCTCCCCAACCCCACCCTCCTCGCGATTCCTCCTCCTCGTCGTCGTCGCCGGCGAGAG
GAGCCGCCGCCCTGTTGCTGGTGCTCGGTCGATCGCCGCGCAGTTGGTGCGCTTCCCTTC
CCTGGAGCCACCACCACCACCACTCACTGCAGGCGAGGGGTGGGTGGTCTACGCTGCGGT
GGTCTCGTCTCCTTCCTGCTGCTGCTGCTGCTGCGCCGGGTATGCAGAGCCAGATCGTGT
GCCATGGCTGCCGGAGCGTGCTGCGGTACCCGAGCGGGGCGCCCAGCGTGTGCTGCGCGC
TCTGCCAGGCCATCACCACCGTGCCGCCCCCTGCCCCAGTAATGGAAATGGCTCATCTAA
TATGTGGTGGTTGCCGAACATTGCTGATGTATACTCGCAATGCGGACACTGTGAGATGTT
CATGTTGCAGTACAGTCAATCTTGTTAGACCAGTGAATAATATAGCACATGTGAGCTGTG
GCCAGTGCCGGACGACTTTGATGTATCCATATGGCGCACCTTCTGTCAAATGTGCCATAT
GCCATTATATCACAAACACCGGAATGAATACTGTGGCACCCACGCCATCTCCAATGCCTA
CATCAAGTGGATCTTCATATAATGCCCCCCCAAGTGGATCTTCATATAATGCCCCCCCAC
CAACTTCAGCTCCCACATCTCGACCCCAGAATGTAACCGTTGTTGTCGAGAACCCTATGA
CTGTTGATGAAAAGGGTAAACTGGTTAGCAATGTTGTAGTTGGAGTTACAACTGGGAAAT
AGCAGCGTATTGTCTGTACCTTGTTACATCCTTGATTTGTACCACTAAATACGTGAAGAT
GGGAATACCATGTATTACACTGGTGTTTGGTTGACCATTGAAGAACAAAAATACAAATGT
TTTTTGGAATCTTGCAAAGGAAAGTATGAACGCCTAAAGTTGTATTTTGTATCTGTTGAT
TCTTTTCTTTGTATATGAGCTCTATTAGACTATATTGTGATAGAAGAATGATGGAATGAC
AAAGCAGTGTCACGTAGTTATACGTACCGTGCAACATGATTGATTTTTTAGTTTGTATTT
CTCTTGC