Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0639400-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:24564913:24565726:-1 gene:Os03g0639400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os03t0639400-01)
Sequence

ATGGACCTAGGACAATTCGTTTCAACCAAGGTAGTATCTTCCATATTCACAATGGCATCA
TCACCATCGCTTGCACTCTCCTTCCTCGTCCTCCTTGTCCTAGCCACTTTCACAACAACC
ACCGTCTTAGCTACGAACAACCTACCACCATCTTCGGCACCGGCTCTATCGCCGGCCTCC
TCCGCCGCGGCAAAGGAGTTCCTCCGTGCGACCTGCACTTCGAAGTCAGAACTACCGGAA
CTCTGCTTCGACATTCTCCTCCCGTACGCCAGCTCCTTCAATGGCAGCCAAGGAAAAGTT
GCTCGAGCTAGCGCGGCCATCGCTATCGAGCGACACCGGGGCCTCCTCGACGAGCTCCGC
GGCTTGAAGCCCGGCCCCGGCGACGTGGGCGCCGAGCGCCGCATGCTTGTGATGCTGCTG
TCCGACTGTGTGCGGGACTTCGACGCGACTTACATGTTCGCCGACGAGACGTTGGCTAGG
ATCGACTTCCTCGTGTCCGGCAGAGGAAGCGAGGAGCAGCGTGCCTCGGATAAGTTGAGA
GCGAATGTGTGGCTTACCTCCGCGATGGATAGTGGCGTGTCATGCACGGACTGGTTTAAC
GAGGAAGGAAGCCATGGCCGCCCCGCCTCGTCGCCCGTGGGGAAGAAGGTGATTGCTGGC
TGCGCGACCGCTACTCAGTACATGTCGATTGCCCTGGAACTTCTCGTGAATTGCATCACT
ACCTAA

Peptide Sequence

PEP ID

Os03t0639400-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:24564913:24565726:-1 gene:Os03g0639400 transcript:Os03t0639400-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os03t0639400-01)
Sequence

MDLGQFVSTKVVSSIFTMASSPSLALSFLVLLVLATFTTTTVLATNNLPPSSAPALSPAS
SAAAKEFLRATCTSKSELPELCFDILLPYASSFNGSQGKVARASAAIAIERHRGLLDELR
GLKPGPGDVGAERRMLVMLLSDCVRDFDATYMFADETLARIDFLVSGRGSEEQRASDKLR
ANVWLTSAMDSGVSCTDWFNEEGSHGRPASSPVGKKVIAGCATATQYMSIALELLVNCIT
T

Transcript Sequence

Transcript ID

Os03t0639400-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:24564913:24565726:-1 gene:Os03g0639400 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase inhibitor domain containing protein. (Os03t0639400-01)
Sequence

ATCGATCAATGGACCTAGGACAATTCGTTTCAACCAAGGTAGTATCTTCCATATTCACAA
TGGCATCATCACCATCGCTTGCACTCTCCTTCCTCGTCCTCCTTGTCCTAGCCACTTTCA
CAACAACCACCGTCTTAGCTACGAACAACCTACCACCATCTTCGGCACCGGCTCTATCGC
CGGCCTCCTCCGCCGCGGCAAAGGAGTTCCTCCGTGCGACCTGCACTTCGAAGTCAGAAC
TACCGGAACTCTGCTTCGACATTCTCCTCCCGTACGCCAGCTCCTTCAATGGCAGCCAAG
GAAAAGTTGCTCGAGCTAGCGCGGCCATCGCTATCGAGCGACACCGGGGCCTCCTCGACG
AGCTCCGCGGCTTGAAGCCCGGCCCCGGCGACGTGGGCGCCGAGCGCCGCATGCTTGTGA
TGCTGCTGTCCGACTGTGTGCGGGACTTCGACGCGACTTACATGTTCGCCGACGAGACGT
TGGCTAGGATCGACTTCCTCGTGTCCGGCAGAGGAAGCGAGGAGCAGCGTGCCTCGGATA
AGTTGAGAGCGAATGTGTGGCTTACCTCCGCGATGGATAGTGGCGTGTCATGCACGGACT
GGTTTAACGAGGAAGGAAGCCATGGCCGCCCCGCCTCGTCGCCCGTGGGGAAGAAGGTGA
TTGCTGGCTGCGCGACCGCTACTCAGTACATGTCGATTGCCCTGGAACTTCTCGTGAATT
GCATCACTACCTAATCCATGTCTTTATCATATCTGTCATATATATCAAGTTGAAATAATA
AAAAAAATTGTGAGGAGTAAAAATATTACATGTG