Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0626600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:23855253:23861941:1 gene:Os03g0626600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, LIM-type domain containing protein. (Os03t0626600-01)
Sequence

ATGGGTTGGCTGAGCAAAATTTTTAAAGGTTCAGTAAATAGAGTATCAAGAGGGCACTAC
AATGGAAACACCCATGAAGGCCACTCAGCATGGCACACTAAAGCCTATGAGCATGACAGT
GACCATGAAGACATAGATCGTGCTATTGCATTATCTTTATCAGAAGAAGATCAGCGGAAG
GGGAAGGCTGTTGATGAGGTAGATATTGATCATCGTTTACATGAAGATGAACAACTTGCA
CGGGCTCTACAAGAGAGTCTGAATGATGAACCTCCTCGTCAGAATGTTCCAGTAAAAGAT
GTTCACTCAGAGAGTACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGA
TTAAGGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTGCATG
GATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAA
TATGAGTTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAGCTTTTC
CATCCAAAATGTGATGTCTGCAAGAACTTTATTCCAACAAACAAAGATGGCCACATTGAA
TATCGGGCCCATCCTTTCTGGATGCAGAAGTATTGTCCTGCCCATGAAACTGATCGTACT
CCTAGGTGCTGCAGTTGTGAACGAATGGAGCCAAAGGATAGTAAGTACATAACATTAGAT
GATGGCCGGAAACTCTGTTTGGAATGCCTGAATACTTCAATAATGGACACAGACGAATGC
CAACCACTATATATTGATATTCAAGAATTCTATGAGGGTTTGAACATGAAAGTGGAACAA
CAAATTCCCTTGCTGTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAGGCCGAGAAA
ACTGGACATCACCTTGCTGAAACCAGAGGTCTCTGCCTATCTGAAGAGCAAATTGTCCGA
ACTATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGA
CCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGCCTTCCA
AGACTGTTAACTGGCTCCATTCTGGCTCATGAGATGATGCATGCTTACCTCCGACTTAAG
GGATACCAAACTCTTGATCCAAAGGTCGAAGAAGGCATCTGTCAGGTTCTAGCTCATATG
TGGCTCGAGTCAGAAATAACATCAGGATCTAGTAGCATCATTGCATCCATCGCAGCATCA
TCATCGTCATCGTCGTCATCTTCAGCACCCTCATCCAAAAAGGGTGTACAGACGGACTTC
GAGAAGAAACTTGGAGAGTTCTTCAAGCACCAGATTGAAACAGACCCTTCTGATGTATAT
GGAGATGGTTTTCGAGATGGCATTAAGGCCGTTGAACGCTATGGCTTGAGAAAAACTCTT
GATCATATGAAGCTTACAGGGGTTTTCCCGTGTTGA

Peptide Sequence

PEP ID

Os03t0626600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:23855253:23861941:1 gene:Os03g0626600 transcript:Os03t0626600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, LIM-type domain containing protein. (Os03t0626600-01)
Sequence

MGWLSKIFKGSVNRVSRGHYNGNTHEGHSAWHTKAYEHDSDHEDIDRAIALSLSEEDQRK
GKAVDEVDIDHRLHEDEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTG
LRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELF
HPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLD
DGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEK
TGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLP
RLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLESEITSGSSSIIASIAAS
SSSSSSSSAPSSKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKTL
DHMKLTGVFPC

Transcript Sequence

Transcript ID

Os03t0626600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:23855253:23861941:1 gene:Os03g0626600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, LIM-type domain containing protein. (Os03t0626600-01)
Sequence

CCTGCTTGGGGGGATCCTCGGGCTTCTTGTCGCAAGAAACCAAGGAGGAGGCTTTAGCCG
AATTACAGGGCTACTTGGAGTTCAGGCTTGAAAGTGGTGGCCAGGTGGGGTTGCCCTGAT
GCCTTCAATGATCTGATTGTTTCTATGCGGTCCCTGTGGTTCTGAACTCGAGGACCCGGG
TCTGGATTTTGTGGAATTTGCTGTTGTCAGAGGTACAAGGATTTTCGTCTGCCAATACTT
GAAAACATGGGTTGGCTGAGCAAAATTTTTAAAGGTTCAGTAAATAGAGTATCAAGAGGG
CACTACAATGGAAACACCCATGAAGGCCACTCAGCATGGCACACTAAAGCCTATGAGCAT
GACAGTGACCATGAAGACATAGATCGTGCTATTGCATTATCTTTATCAGAAGAAGATCAG
CGGAAGGGGAAGGCTGTTGATGAGGTAGATATTGATCATCGTTTACATGAAGATGAACAA
CTTGCACGGGCTCTACAAGAGAGTCTGAATGATGAACCTCCTCGTCAGAATGTTCCAGTA
AAAGATGTTCACTCAGAGAGTACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCA
ACTGGATTAAGGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGT
TGCATGGATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATA
TCAGAATATGAGTTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAG
CTTTTCCATCCAAAATGTGATGTCTGCAAGAACTTTATTCCAACAAACAAAGATGGCCAC
ATTGAATATCGGGCCCATCCTTTCTGGATGCAGAAGTATTGTCCTGCCCATGAAACTGAT
CGTACTCCTAGGTGCTGCAGTTGTGAACGAATGGAGCCAAAGGATAGTAAGTACATAACA
TTAGATGATGGCCGGAAACTCTGTTTGGAATGCCTGAATACTTCAATAATGGACACAGAC
GAATGCCAACCACTATATATTGATATTCAAGAATTCTATGAGGGTTTGAACATGAAAGTG
GAACAACAAATTCCCTTGCTGTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAGGCC
GAGAAAACTGGACATCACCTTGCTGAAACCAGAGGTCTCTGCCTATCTGAAGAGCAAATT
GTCCGAACTATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATT
ACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGC
CTTCCAAGACTGTTAACTGGCTCCATTCTGGCTCATGAGATGATGCATGCTTACCTCCGA
CTTAAGGGATACCAAACTCTTGATCCAAAGGTCGAAGAAGGCATCTGTCAGGTTCTAGCT
CATATGTGGCTCGAGTCAGAAATAACATCAGGATCTAGTAGCATCATTGCATCCATCGCA
GCATCATCATCGTCATCGTCGTCATCTTCAGCACCCTCATCCAAAAAGGGTGTACAGACG
GACTTCGAGAAGAAACTTGGAGAGTTCTTCAAGCACCAGATTGAAACAGACCCTTCTGAT
GTATATGGAGATGGTTTTCGAGATGGCATTAAGGCCGTTGAACGCTATGGCTTGAGAAAA
ACTCTTGATCATATGAAGCTTACAGGGGTTTTCCCGTGTTGAAGTCACAAATTTAGAGTA
TGAAGAATACATTGAGGAATTTTGGTTCAAGTTAGACATGCCAAAAGGGTATATATGCTG
TTAACATTAACTGAGCAATAGAATAGACGAGAAACAATGATTTTGTTTTAGTAAATTTCA
GAAAGTTACAACTATCTTGTCTAAATTATCGGTTTGCTGCAATATTAGTTGGCTATTTCA
GAAAACTACAGCAGTAGTTGATTTTATCAGAAAACTGTTACACTTTGGGCCTAGATGTCA
AACACTTAGTTTCTGATAAAATCATTCGCTATCGTTGTTGTTTTGTGAAAAATGTTTGGA
TGAAGTTCTAGGCTTCTAGCCATAGTGATAATTTTGACTAAACAGTTATAGTTTTGTG