Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0626100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:23836063:23839587:1 gene:Os03g0626100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os03t0626100-01)
Sequence

ATGGACGGCAGCGACGACGAGTGCTGCTACTACTACGACGCCGTCGACAGCGATGGGGAC
GAGGAGGAGGAGGAGGAGATAATAATGCTGGACGAGGACGACGTAGGCTTGCTCGACGGC
GCCGCGCTGCCGCCGCCGGAGGAGGAGGTGGAGCACCGCGCGATTTGCTGGGCCATTACA
AAAGAATCCCTTGCAGCTGCGCAGGAGCAAGACCTGTCCATGGTGATGAACCTGGTGAAC
GTTGAGCGGCACAACGCGCGCGCCCTCCTCGCCCACCACCGGTGGAAGATGGAGCGCATC
TACGACCGCCTCGACATGATGGGCCGGGACGCCTTGCTCAGGGACGCCGGCGTCGTTGTG
CTGCCGGAGAAGAGCAGCAGCAGCGGCAGCAGCATGGCCATGGCGAAGACGAACCCCCCG
GGAAGCGTGGCTGTCACCTGCAACGTCTGCTTTGAGGAGTACCCACTCGGCTCTGTCTCC
GCCATGGATTGTGGCCACTGCTTCTGCAATGACTGTTGGACGGAGTACTTCGCTGCGGCG
GTGAGCGACGGCAGCAAGCAGATGAGGTGCATGGAGGTGAAGTGCACGGCGATCTGCGAC
GAGGCGGTGGTGCGGCTGCTGCTGCACGGGAAGCACCCCGGCGCGGCGGCGCGGCTGGAC
CGCCGCCTCCTGGAGGCGTGCGTGGAGGCCAGCGACGCGGTGCGGTGGTGCCCCAGCGCG
CCGCACTGCGGGCGCGCCATCCGGGTGGACGGCGGGGGCGGCGGCGAGGAGCGGTACGCC
GAGGTGTCGTGCCCCTGCGGCGCCGTCTTCTGCTTCCGCTGCGGCGGCGGCGCGCACTCG
CCGTGCCCGTGCCCCATGTGGGACAAGTGGGGCGCCATGCGCGGCGGCGGCGAGGTCGAC
AACCTCAAGTGGATCGTCGCCAACACCAAGAGCTGCCCCAAGTGCTCCAAGCCCATCGAG
AAGAACGGCGGCTGCAACCATGTCACTTGCACCTGCGGCCAGCATCTCTGCTACGCGTGC
GGCGCGGCGACGGGGACGTTGTACATGCACATCTGCAACCGCTACAAGGAGGAGGGCGGC
GGCGGCGGCGTGAAGGTGGAGATGACCGCCGGTGGGCGGCAGCGGCTGCGGTTCATGCAC
TACTACGAGCGGTTCGAGATCCACACCGAGTCGTACAAGGAGGAGCAGGGGAAGCTGGGT
CCGGCCATCGACGCTCTGGCGCGGCGGCTGGAGGCGGACGCCACGCTGCCGTGGTCGGGC
ACCAGGGACGCCCGGTGGCCGTCGGCGGCGCACCGGCGGCTGCTGCGGTGCCGGCAGGTG
CTCCCGCGGTCGTACGTGCTCGCCTACTACATGTTCGGCGGCGGCGCGGCGACGCGGCGC
GAGCGGGAGGAGGCGGCGGCGCAGAACCGGTTCGAGGATTTGCAGGGGCAGCTGGAGCAC
CACGTGGAGGTGCTGTCCAGGACGCTGGCGGCGGCGGCGCGGCCGGCCGACGCGGCGGAG
GTCGTGAAGGCGAAGCGCGACGCCGACAACCTCGCCCGCGTCGTCGAGGGGCTGTGCGCC
GGGATGTACCGGTGCGTCCAGGACGAGCTGCTGCCGCTGCTCGTCGAGCCCATGAACATC
GCCGCGTACCATCCGGACGGCCCGGCCATGGCCAAGGAGTTCCCGCCGGCGACCAGCGTG
ACCGGCGGAGCACCGCCGGCGACACGCCACTAA

Peptide Sequence

PEP ID

Os03t0626100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:23836063:23839587:1 gene:Os03g0626100 transcript:Os03t0626100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os03t0626100-01)
Sequence

MDGSDDECCYYYDAVDSDGDEEEEEEIIMLDEDDVGLLDGAALPPPEEEVEHRAICWAIT
KESLAAAQEQDLSMVMNLVNVERHNARALLAHHRWKMERIYDRLDMMGRDALLRDAGVVV
LPEKSSSSGSSMAMAKTNPPGSVAVTCNVCFEEYPLGSVSAMDCGHCFCNDCWTEYFAAA
VSDGSKQMRCMEVKCTAICDEAVVRLLLHGKHPGAAARLDRRLLEACVEASDAVRWCPSA
PHCGRAIRVDGGGGGEERYAEVSCPCGAVFCFRCGGGAHSPCPCPMWDKWGAMRGGGEVD
NLKWIVANTKSCPKCSKPIEKNGGCNHVTCTCGQHLCYACGAATGTLYMHICNRYKEEGG
GGGVKVEMTAGGRQRLRFMHYYERFEIHTESYKEEQGKLGPAIDALARRLEADATLPWSG
TRDARWPSAAHRRLLRCRQVLPRSYVLAYYMFGGGAATRREREEAAAQNRFEDLQGQLEH
HVEVLSRTLAAAARPADAAEVVKAKRDADNLARVVEGLCAGMYRCVQDELLPLLVEPMNI
AAYHPDGPAMAKEFPPATSVTGGAPPATRH

Transcript Sequence

Transcript ID

Os03t0626100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:23836063:23839587:1 gene:Os03g0626100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os03t0626100-01)
Sequence

ATCAAATTCCAAAAACCCTCCGCGAGCTCCGACGACGCGGCCGCCATGGACGGCAGCGAC
GACGAGTGCTGCTACTACTACGACGCCGTCGACAGCGATGGGGACGAGGAGGAGGAGGAG
GAGATAATAATGCTGGACGAGGACGACGTAGGCTTGCTCGACGGCGCCGCGCTGCCGCCG
CCGGAGGAGGAGGTGGAGCACCGCGCGATTTGCTGGGCCATTACAAAAGAATCCCTTGCA
GCTGCGCAGGAGCAAGACCTGTCCATGGTGATGAACCTGGTGAACGTTGAGCGGCACAAC
GCGCGCGCCCTCCTCGCCCACCACCGGTGGAAGATGGAGCGCATCTACGACCGCCTCGAC
ATGATGGGCCGGGACGCCTTGCTCAGGGACGCCGGCGTCGTTGTGCTGCCGGAGAAGAGC
AGCAGCAGCGGCAGCAGCATGGCCATGGCGAAGACGAACCCCCCGGGAAGCGTGGCTGTC
ACCTGCAACGTCTGCTTTGAGGAGTACCCACTCGGCTCTGTCTCCGCCATGGATTGTGGC
CACTGCTTCTGCAATGACTGTTGGACGGAGTACTTCGCTGCGGCGGTGAGCGACGGCAGC
AAGCAGATGAGGTGCATGGAGGTGAAGTGCACGGCGATCTGCGACGAGGCGGTGGTGCGG
CTGCTGCTGCACGGGAAGCACCCCGGCGCGGCGGCGCGGCTGGACCGCCGCCTCCTGGAG
GCGTGCGTGGAGGCCAGCGACGCGGTGCGGTGGTGCCCCAGCGCGCCGCACTGCGGGCGC
GCCATCCGGGTGGACGGCGGGGGCGGCGGCGAGGAGCGGTACGCCGAGGTGTCGTGCCCC
TGCGGCGCCGTCTTCTGCTTCCGCTGCGGCGGCGGCGCGCACTCGCCGTGCCCGTGCCCC
ATGTGGGACAAGTGGGGCGCCATGCGCGGCGGCGGCGAGGTCGACAACCTCAAGTGGATC
GTCGCCAACACCAAGAGCTGCCCCAAGTGCTCCAAGCCCATCGAGAAGAACGGCGGCTGC
AACCATGTCACTTGCACCTGCGGCCAGCATCTCTGCTACGCGTGCGGCGCGGCGACGGGG
ACGTTGTACATGCACATCTGCAACCGCTACAAGGAGGAGGGCGGCGGCGGCGGCGTGAAG
GTGGAGATGACCGCCGGTGGGCGGCAGCGGCTGCGGTTCATGCACTACTACGAGCGGTTC
GAGATCCACACCGAGTCGTACAAGGAGGAGCAGGGGAAGCTGGGTCCGGCCATCGACGCT
CTGGCGCGGCGGCTGGAGGCGGACGCCACGCTGCCGTGGTCGGGCACCAGGGACGCCCGG
TGGCCGTCGGCGGCGCACCGGCGGCTGCTGCGGTGCCGGCAGGTGCTCCCGCGGTCGTAC
GTGCTCGCCTACTACATGTTCGGCGGCGGCGCGGCGACGCGGCGCGAGCGGGAGGAGGCG
GCGGCGCAGAACCGGTTCGAGGATTTGCAGGGGCAGCTGGAGCACCACGTGGAGGTGCTG
TCCAGGACGCTGGCGGCGGCGGCGCGGCCGGCCGACGCGGCGGAGGTCGTGAAGGCGAAG
CGCGACGCCGACAACCTCGCCCGCGTCGTCGAGGGGCTGTGCGCCGGGATGTACCGGTGC
GTCCAGGACGAGCTGCTGCCGCTGCTCGTCGAGCCCATGAACATCGCCGCGTACCATCCG
GACGGCCCGGCCATGGCCAAGGAGTTCCCGCCGGCGACCAGCGTGACCGGCGGAGCACCG
CCGGCGACACGCCACTAAGCCACAACGTGTCGAGTTCATTATTACTATACGAAGCAAGGT
TGTAAACGGTCGATGGGTGAAGGGAAGCAGGTGGTTTTGGGAAAAATTCTATTGTCCAAA
CATGTTTGTGGTTTGGCATGGTGGATTTTTGGATTAATTACTAGCTAAGTAGTATAGGAA
ATATCCTATATTGATACAGAGGAAATGATGGATTATTTTGTGCTGATTAATTAGTCTAAT
TGTTCGACGTTGTGC