Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0625800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:23812565:23816582:1 gene:Os03g0625800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os03t0625800-01)
Sequence

ATGGCCAGCGACCGCCGCTACTACTACTTCGAAGAAGACGATGGCGATGGCGAGGAGGAG
GTGGAGTGGCTGGCGATGGAGGCCGACGAGGACGACGTCGGCCTGCTCGAGGAGGACGAC
CTTCACCTGCGGCTTCCCGACGACCGCCCCGCGGATTGCTGGGCCATCACACAAGAGTCA
CTTCCTGCTGCCCAGCAACAAGACCTGTCTATGGTAATGAACTTGCTCAACATAAAGCAG
CACCTTGCACGCACACTCCTTATCCACCACCGGTGGAAGATGCATTGCATTTATGATCAC
CTTGACAGAAAGGGGCGGGACCGCATGCTCAGTGAGGCATGCATTATTTTGCCGAAGAAT
AGCATGTCAGCAGCTAGCTCAACAAGTGTTACCTGCAATGTGTGTTTTGAGGACTTCTCA
ATGACTGATGTCTCGACCATGGACTGTGGGCATTGCTTCTGCAATGACTGTTGGACAGAG
CACTTCTTTGCATCCATTAATACTGGCAACAAGCAGATTCGGTGCATGGAGGTTAAGTGC
AAGGCCATTTGTGATGAGGACATTGTGCGCCGCCTCCTCAGTCTGAAGTACCCTGCTGCA
TCTAAGCGCTTCGATCTCCTCCTACTTGAGTCTTACCTTGAGGACAATGACTCAGTGAAG
TGGTGCCCCAGTGCCCCACACTGTGGCCGCGCAATCCAGGTAGGCACCGGCGAGAGGTAC
TGCGAGGTCGCTTGCCCCTGTGGTGTCAGCTTCTGCTTCAACTGTGCAGGGCAGGTGCAC
TCGCCTTGCCCATGTGCCATATGGGAGAAGTGGAAAGCTAAGGGCCATGGAGACTCGGAT
AGCGTCAAGTGGATTCTTGCCAACACCAAGAGCTGCCCCAAGTGCTCCAAGCCCATCGAG
AAGAACGGTGGCTGCAACCTTGTCCATTGCAAGTGCGGCCAGTGTCTATGCTGGCTCTGT
GGTGGGCCTACCGGGAGGGAGCACACTTGGGATAGCATCTCCGGCCACAGCTGCAACCGC
TACAAGGAGGAAAACGGCGACAAGGTGGACACCAGCAGACAGCAGATGCAGCGGTACACG
CACTACTGGGACCGTTACAACATCCACGCCGGCTCGTACAAGGTGGAGCAGAAGGATCTT
GGGCCTGCCGTCGAGGAGCAGGTGAAGAAGCTGGAGTCGAACCTAACAGGTCCGAAGATG
AACTGGGACGGTAGCTGGCTCGCCATGGCGTACCAATCCCTGCTCGCATCGCGGCAGGTG
CTGTCGCGGTCGTACGCCTTCGCCTACTACATGTTTGGCGGCGGCGAGGTGAAGACGCAC
CCGTCGGAGCGGGCGAGCCTCGCCGTGGCGCAGAACCTCTTCGAGGACCGGCAGGAGCAG
CTGGAGCGCCACGTTGAGCATCTCTCCAAGGAGCTCGCCACGGACTTGCTGGGGCTGCCG
GAGGAGGAGATCGTCCTGAAGAAGGTGGAGATTGCCAACCTCGCCAAGATCGTCCAGGCA
ATCTGCGGGCAGTTGTACAGGTGCATCCAGGACGAACTCCTGCCACTGCTCGTCCAGCCC
ATGAACATTGCCGCGTACCAGCCGGACGGCCCTGACAAGGCCAAGGAGTTCATCGGGGCT
TGA

Peptide Sequence

PEP ID

Os03t0625800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:23812565:23816582:1 gene:Os03g0625800 transcript:Os03t0625800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os03t0625800-01)
Sequence

MASDRRYYYFEEDDGDGEEEVEWLAMEADEDDVGLLEEDDLHLRLPDDRPADCWAITQES
LPAAQQQDLSMVMNLLNIKQHLARTLLIHHRWKMHCIYDHLDRKGRDRMLSEACIILPKN
SMSAASSTSVTCNVCFEDFSMTDVSTMDCGHCFCNDCWTEHFFASINTGNKQIRCMEVKC
KAICDEDIVRRLLSLKYPAASKRFDLLLLESYLEDNDSVKWCPSAPHCGRAIQVGTGERY
CEVACPCGVSFCFNCAGQVHSPCPCAIWEKWKAKGHGDSDSVKWILANTKSCPKCSKPIE
KNGGCNLVHCKCGQCLCWLCGGPTGREHTWDSISGHSCNRYKEENGDKVDTSRQQMQRYT
HYWDRYNIHAGSYKVEQKDLGPAVEEQVKKLESNLTGPKMNWDGSWLAMAYQSLLASRQV
LSRSYAFAYYMFGGGEVKTHPSERASLAVAQNLFEDRQEQLERHVEHLSKELATDLLGLP
EEEIVLKKVEIANLAKIVQAICGQLYRCIQDELLPLLVQPMNIAAYQPDGPDKAKEFIGA

Transcript Sequence

Transcript ID

Os03t0625800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:23812565:23816582:1 gene:Os03g0625800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, C6HC-type domain containing protein. (Os03t0625800-01)
Sequence

CGCGGCGATCAAAAAAACCCAACCCCTCCTCTCCTCGCCGCCGCCGCCCATGGCCAGCGA
CCGCCGCTACTACTACTTCGAAGAAGACGATGGCGATGGCGAGGAGGAGGTGGAGTGGCT
GGCGATGGAGGCCGACGAGGACGACGTCGGCCTGCTCGAGGAGGACGACCTTCACCTGCG
GCTTCCCGACGACCGCCCCGCGGATTGCTGGGCCATCACACAAGAGTCACTTCCTGCTGC
CCAGCAACAAGACCTGTCTATGGTAATGAACTTGCTCAACATAAAGCAGCACCTTGCACG
CACACTCCTTATCCACCACCGGTGGAAGATGCATTGCATTTATGATCACCTTGACAGAAA
GGGGCGGGACCGCATGCTCAGTGAGGCATGCATTATTTTGCCGAAGAATAGCATGTCAGC
AGCTAGCTCAACAAGTGTTACCTGCAATGTGTGTTTTGAGGACTTCTCAATGACTGATGT
CTCGACCATGGACTGTGGGCATTGCTTCTGCAATGACTGTTGGACAGAGCACTTCTTTGC
ATCCATTAATACTGGCAACAAGCAGATTCGGTGCATGGAGGTTAAGTGCAAGGCCATTTG
TGATGAGGACATTGTGCGCCGCCTCCTCAGTCTGAAGTACCCTGCTGCATCTAAGCGCTT
CGATCTCCTCCTACTTGAGTCTTACCTTGAGGACAATGACTCAGTGAAGTGGTGCCCCAG
TGCCCCACACTGTGGCCGCGCAATCCAGGTAGGCACCGGCGAGAGGTACTGCGAGGTCGC
TTGCCCCTGTGGTGTCAGCTTCTGCTTCAACTGTGCAGGGCAGGTGCACTCGCCTTGCCC
ATGTGCCATATGGGAGAAGTGGAAAGCTAAGGGCCATGGAGACTCGGATAGCGTCAAGTG
GATTCTTGCCAACACCAAGAGCTGCCCCAAGTGCTCCAAGCCCATCGAGAAGAACGGTGG
CTGCAACCTTGTCCATTGCAAGTGCGGCCAGTGTCTATGCTGGCTCTGTGGTGGGCCTAC
CGGGAGGGAGCACACTTGGGATAGCATCTCCGGCCACAGCTGCAACCGCTACAAGGAGGA
AAACGGCGACAAGGTGGACACCAGCAGACAGCAGATGCAGCGGTACACGCACTACTGGGA
CCGTTACAACATCCACGCCGGCTCGTACAAGGTGGAGCAGAAGGATCTTGGGCCTGCCGT
CGAGGAGCAGGTGAAGAAGCTGGAGTCGAACCTAACAGGTCCGAAGATGAACTGGGACGG
TAGCTGGCTCGCCATGGCGTACCAATCCCTGCTCGCATCGCGGCAGGTGCTGTCGCGGTC
GTACGCCTTCGCCTACTACATGTTTGGCGGCGGCGAGGTGAAGACGCACCCGTCGGAGCG
GGCGAGCCTCGCCGTGGCGCAGAACCTCTTCGAGGACCGGCAGGAGCAGCTGGAGCGCCA
CGTTGAGCATCTCTCCAAGGAGCTCGCCACGGACTTGCTGGGGCTGCCGGAGGAGGAGAT
CGTCCTGAAGAAGGTGGAGATTGCCAACCTCGCCAAGATCGTCCAGGCAATCTGCGGGCA
GTTGTACAGGTGCATCCAGGACGAACTCCTGCCACTGCTCGTCCAGCCCATGAACATTGC
CGCGTACCAGCCGGACGGCCCTGACAAGGCCAAGGAGTTCATCGGGGCTTGACATACAGA
CAAGGCTAGCTTCCAGTTTGGCAGCTGCCGCTAACCTCACTGTGCTTATCAGGTAAGTTA
TATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC
AGTATGTAGATTTGACTTACTTACGCCTGAGCGAAGGACGTAATGTTCATTCGAAATTAA
AGTGCTATACTTGCCTTATTTTTTGGTTGTTGGGGCGTATTTTGGTTTCAAAATAGTATT
CTAAGCATTGACCATTCTTCTCATAAGATAGATAATTCTTTTTTTTTCCGTGAGG