Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0603600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:22616005:22619553:1 gene:Os03g0603600 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os03t0603600-01)
Sequence

ATGGCTGCCTTCTGGCTCATCTCTATCATTGTCCTTGTACTACTTTCTGGAGAATCCAAT
GCCAATCCAGCTGCCTCTCAGCAGAGTCAGCTGGATGTAAACCACAGGAAGCCACTTCAA
ACTTTCAGACCTTACAACATTGCCCACAGGGGTTCCAATGGTGAAATACCCGAAGAGACC
ACGGCTGCCTACCTGAGGGCTATTGAAGAAGGTGCAGACTTCATAGAGTCTGACATACTT
GCAACAAAGGACGGACATCTGATATGTTTCCACGATGTTATATTGGACGCAACAACTGAT
ATCGCCAATCGTACAGAATTTGCCAACAGGAAGAGAACCTATGAAGTTGAGAGACAAAAT
GTGACCGGCTGGTTTGTTGTGGATTTTACTCTTGAAGAACTCAAGTCACTGAGGGTGAAA
CAACGCTACAATTTCAGGGACCAACAGTACAATGGGAAGTACCAGATTATTACATTTGAT
GAGTACATCTTGATTGCGCTTTATGCCGATAGGGTTGTTGGGATATACCCAGAGCTCAAG
AATCCCATTTTCATCAACGAGCACGTCAAATGGTCAGACGGGAAGAAGTTTGAGGACAAG
TTTGTCCAGACACTGCTGAAATATGGTTACAAAGGCGAATACATGTCTGAAGATTGGCTT
AAACAGCCATTGTTCATTCAATCCTTCGCACCATCGTCACTCATTTACATGTCAAATATG
ACAAACTCTCCAAAAATATTCCTAATCGACGATACCACAGTTAGAACTCAAGACACTAAT
CAGTCATACTACGAGATAACTTCGGACGCTTACCTTGCGTTCATAAGGAAGTACATAGTT
GGCATTGGACCATGGAAAGATACAATTGTTCCTCCCATAAATAATTACCTAGGTCCCCCA
ACCGATCTTGTCGCGCGAGCACACGCTCTGAATCTTCAGGTGCATCCATACACTTTCAGA
AACGAGAACATGTTCTTGCACTTCGACTTCCACCAAGACCCTTATCTTGAGTACGAGTAT
TGGCTCGGTGAGATTGGCGTCGACGGGCTTTTCACTGATTTCACTGGTACCTTGCACAGG
TTCCAGGAATGCACAACTCCGTATCCAAAGAATGAAAAGAATGCAGAGGCACTCTTGCAG
AAAATTAACTACATGCTGAAGGATAGCGGATACTAA

Peptide Sequence

PEP ID

Os03t0603600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:22616005:22619553:1 gene:Os03g0603600 transcript:Os03t0603600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os03t0603600-01)
Sequence

MAAFWLISIIVLVLLSGESNANPAASQQSQLDVNHRKPLQTFRPYNIAHRGSNGEIPEET
TAAYLRAIEEGADFIESDILATKDGHLICFHDVILDATTDIANRTEFANRKRTYEVERQN
VTGWFVVDFTLEELKSLRVKQRYNFRDQQYNGKYQIITFDEYILIALYADRVVGIYPELK
NPIFINEHVKWSDGKKFEDKFVQTLLKYGYKGEYMSEDWLKQPLFIQSFAPSSLIYMSNM
TNSPKIFLIDDTTVRTQDTNQSYYEITSDAYLAFIRKYIVGIGPWKDTIVPPINNYLGPP
TDLVARAHALNLQVHPYTFRNENMFLHFDFHQDPYLEYEYWLGEIGVDGLFTDFTGTLHR
FQECTTPYPKNEKNAEALLQKINYMLKDSGY

Transcript Sequence

Transcript ID

Os03t0603600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:22616005:22619553:1 gene:Os03g0603600 gene_biotype:protein_coding transcript_biotype:protein_coding description:PLC-like phosphodiesterase, TIM beta/alpha-barrel domain domain containing protein. (Os03t0603600-01)
Sequence

TAGGGAGGAGAGAGAAAGAAGGAAAGGCTCCTCTTTTGAGAAGACGAGGTTTTAGCTCAG
ACTATTGCAGGAGGAAGAGGAAGGAGAGAGAAGCATGGCTGCCTTCTGGCTCATCTCTAT
CATTGTCCTTGTACTACTTTCTGGAGAATCCAATGCCAATCCAGCTGCCTCTCAGCAGAG
TCAGCTGGATGTAAACCACAGGAAGCCACTTCAAACTTTCAGACCTTACAACATTGCCCA
CAGGGGTTCCAATGGTGAAATACCCGAAGAGACCACGGCTGCCTACCTGAGGGCTATTGA
AGAAGGTGCAGACTTCATAGAGTCTGACATACTTGCAACAAAGGACGGACATCTGATATG
TTTCCACGATGTTATATTGGACGCAACAACTGATATCGCCAATCGTACAGAATTTGCCAA
CAGGAAGAGAACCTATGAAGTTGAGAGACAAAATGTGACCGGCTGGTTTGTTGTGGATTT
TACTCTTGAAGAACTCAAGTCACTGAGGGTGAAACAACGCTACAATTTCAGGGACCAACA
GTACAATGGGAAGTACCAGATTATTACATTTGATGAGTACATCTTGATTGCGCTTTATGC
CGATAGGGTTGTTGGGATATACCCAGAGCTCAAGAATCCCATTTTCATCAACGAGCACGT
CAAATGGTCAGACGGGAAGAAGTTTGAGGACAAGTTTGTCCAGACACTGCTGAAATATGG
TTACAAAGGCGAATACATGTCTGAAGATTGGCTTAAACAGCCATTGTTCATTCAATCCTT
CGCACCATCGTCACTCATTTACATGTCAAATATGACAAACTCTCCAAAAATATTCCTAAT
CGACGATACCACAGTTAGAACTCAAGACACTAATCAGTCATACTACGAGATAACTTCGGA
CGCTTACCTTGCGTTCATAAGGAAGTACATAGTTGGCATTGGACCATGGAAAGATACAAT
TGTTCCTCCCATAAATAATTACCTAGGTCCCCCAACCGATCTTGTCGCGCGAGCACACGC
TCTGAATCTTCAGGTGCATCCATACACTTTCAGAAACGAGAACATGTTCTTGCACTTCGA
CTTCCACCAAGACCCTTATCTTGAGTACGAGTATTGGCTCGGTGAGATTGGCGTCGACGG
GCTTTTCACTGATTTCACTGGTACCTTGCACAGGTTCCAGGAATGCACAACTCCGTATCC
AAAGAATGAAAAGAATGCAGAGGCACTCTTGCAGAAAATTAACTACATGCTGAAGGATAG
CGGATACTAAGCTTGCATGACAACTCACTGTACTGTTACTTTTCAGATTTGTTTCATTAT
TGTCACCACTGAAAAAGGCACCACCCTTGCAGTTTCTACAATTGTTAAAATAAAGCAGCT
TGTAGAATAAAAGTAAATTGAAATGTGTTTTCACAATATCATGTCTGTAAACCTTATTCC
TAACTCCAGAAAGGGGCAAGATAGCTAAAACCG