Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0588600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:21748596:21751686:1 gene:Os03g0588600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Frigida-like family protein. (Os03t0588600-01)
Sequence

ATGGTGGTGTCCGATTCCCCGAAACCCCAACCAACCCCCTCGCCGCCGGCGCCACCCCCA
CTTCCGGTCCCGGCGGCGGCGGGGACGACGATGGGGGAGCTGGAGGCGGCCATCGAGGCG
CTCGCCGCCAAGAAGCTGCGCCTCCGCGAGGCCTTCGATTGCCTCGTCGCCTGCTCCCCC
ATCCCCATCCCCTTCCGCTGGGACGACATCGACGCCCACGTCTCGTCCATCCAGTCCTCC
GTCGCCGGCCGCTTCCGCCAGTTCCAGGCGCTCCAGACCGCCGCCACCGCTGGAATAACG
GCGGCCCCGGCCACCAGCAACGCCAGCAGCCGCGTCGAGCGTTCGGTCGAACACCTTGTG
GTGGTGGTGGAGGGCCAAGAGTCCCACGTCGCGCGCCATGAGGACGGTGGAAACGGTGAG
GGTGAGGGTGAGGGTGAGGGTGGGCTAGGCAAGGAGGTGGCTATGGACGTAGAATCCGAG
GAGGAGAACGGCATGGTGGTGGAGGTGGCAAGCGAGGCGCCTCGCGGAGAAGACGGTGAG
GTGGAGGAGGACGAGAAGATGGGGGGGCCAATCAATGCGTCTCCTCCTAGCGAAGAAATC
CATGGGAAGGGCGCGGACATGTCGAGAAGATGGGGGAATCCCATGGAAATGTCGGCCGAC
GTGGACGATGCGAAGACCAAGACGACGGCGACGGCGGCGGCGGCGGAACTGACGGCGATG
GCGATCTCTCCGATTCCGGGATTCACAGGCAGAGGGGGCGCGGAGGCGTCGCTGAGGCGG
TCTCTCGCGGCGGCGTGCGCGAGCATGGACTCGTCGAGCCTGGCGCGCATCCTGTGCTCG
TCCGGCAGCAGCAGCAGCAGCCACGCCACCCTCGCCGCACGTCACTTCCGCCCGGCGCTT
CTCGCCGCCGCCGAACCCGCGGCGCTCGTCGTCCGCGCCGTCAGGGACCTGCTGGCCGGG
ACGGCGCCCATCAGGGACAGCGCGTGGGAGAGCTGCGTGGAGCTGCTCAGCTGCGTGCCC
AAGCTCGCCGTGGCGCCGTCGCCGGGCACGATGGAGCAGGCCAATCGCTTGGCCGAGGAC
TGGAAGGAGATGATCGGGAGGACCGAAAGTTGCAGCATGAACCTCGGCCGGTTGGCTGTA
TGGGGCCTTCTCAACTTTCTTGTCTCCTACAACATTGTCCTGGAGTTCGACGCGGAAGAA
ATCATCCATTTCTTTGGCACTCTCCCGGACGACAAGAAGCAGTGTTGCATCTCCCTCTGC
AAGTATCTTGGACTGATTGACAAGATGGCTGATTCAGTTGGTCATTTGATTGAACATGGA
CAACAACTTGTCGCTATCAGATTGGCATGCACTTTGAATTTGACAGACAAATACACTCCA
CTTTCCATCATGGAAGACTATATTCAGAATGCTAAGGAGACTGCTCAAGAGATACTGAGC
ATGGAAAGTGATTCAGAGTCACTGAAACTGTCCATGTCAAAGCAGGTCAATGCTCTAATA
TTGTCATGGAGGGTTGTTGGTGAATGCAATATTGACTCTGTCCATTGTGATAGAATTAAG
GCAGAAATTACCCAGCTGTTGCATAAATATGCAAACAAGAGGCACAGCCTAGAAGAACTT
CCTTCTGATACTTCTAGTCCACATCAGAAACATCACCAAATGTCGCAAGAGAAGCACCAC
TGGCAGCAAAAGCATCGAGAGGAACAACAGCAGCAGTTTCAAAATCAATCCAAGGAACAA
GAACAAGAGAGAAGGATGCAAAAGTTACGAGAGCTGAGGAAAAAGAAAAACAAGAGAACT
CAGCGCAGGAAGCGGAAGCAAAATGCACAAGTGATGAAGCAGCATCAATTTGAGAAACAG
CGAAAACTATATCACGCTGGTTCATTTACCAATTCTCAAAGCTATGTCAGATCAGAAATT
CACCACCACCTCAGCCAGCATTTTTCAGGAACTATAGGAACACCTGTTGCACCATATACA
CCTGTTGCACCATATACCGGACCTTTTTGGTAG

Peptide Sequence

PEP ID

Os03t0588600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:21748596:21751686:1 gene:Os03g0588600 transcript:Os03t0588600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Frigida-like family protein. (Os03t0588600-01)
Sequence

MVVSDSPKPQPTPSPPAPPPLPVPAAAGTTMGELEAAIEALAAKKLRLREAFDCLVACSP
IPIPFRWDDIDAHVSSIQSSVAGRFRQFQALQTAATAGITAAPATSNASSRVERSVEHLV
VVVEGQESHVARHEDGGNGEGEGEGEGGLGKEVAMDVESEEENGMVVEVASEAPRGEDGE
VEEDEKMGGPINASPPSEEIHGKGADMSRRWGNPMEMSADVDDAKTKTTATAAAAELTAM
AISPIPGFTGRGGAEASLRRSLAAACASMDSSSLARILCSSGSSSSSHATLAARHFRPAL
LAAAEPAALVVRAVRDLLAGTAPIRDSAWESCVELLSCVPKLAVAPSPGTMEQANRLAED
WKEMIGRTESCSMNLGRLAVWGLLNFLVSYNIVLEFDAEEIIHFFGTLPDDKKQCCISLC
KYLGLIDKMADSVGHLIEHGQQLVAIRLACTLNLTDKYTPLSIMEDYIQNAKETAQEILS
MESDSESLKLSMSKQVNALILSWRVVGECNIDSVHCDRIKAEITQLLHKYANKRHSLEEL
PSDTSSPHQKHHQMSQEKHHWQQKHREEQQQQFQNQSKEQEQERRMQKLRELRKKKNKRT
QRRKRKQNAQVMKQHQFEKQRKLYHAGSFTNSQSYVRSEIHHHLSQHFSGTIGTPVAPYT
PVAPYTGPFW

Transcript Sequence

Transcript ID

Os03t0588600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:21748596:21751686:1 gene:Os03g0588600 gene_biotype:protein_coding transcript_biotype:protein_coding description:Frigida-like family protein. (Os03t0588600-01)
Sequence

GAACCAACCCGGCTATTCCATTCCCCTCTCATTTGGACCCCAAGGCCCATCCCAGGTCGC
ACGCTGATCTCCGCACCCGCCACCCGCAATGGTGGTGTCCGATTCCCCGAAACCCCAACC
AACCCCCTCGCCGCCGGCGCCACCCCCACTTCCGGTCCCGGCGGCGGCGGGGACGACGAT
GGGGGAGCTGGAGGCGGCCATCGAGGCGCTCGCCGCCAAGAAGCTGCGCCTCCGCGAGGC
CTTCGATTGCCTCGTCGCCTGCTCCCCCATCCCCATCCCCTTCCGCTGGGACGACATCGA
CGCCCACGTCTCGTCCATCCAGTCCTCCGTCGCCGGCCGCTTCCGCCAGTTCCAGGCGCT
CCAGACCGCCGCCACCGCTGGAATAACGGCGGCCCCGGCCACCAGCAACGCCAGCAGCCG
CGTCGAGCGTTCGGTCGAACACCTTGTGGTGGTGGTGGAGGGCCAAGAGTCCCACGTCGC
GCGCCATGAGGACGGTGGAAACGGTGAGGGTGAGGGTGAGGGTGAGGGTGGGCTAGGCAA
GGAGGTGGCTATGGACGTAGAATCCGAGGAGGAGAACGGCATGGTGGTGGAGGTGGCAAG
CGAGGCGCCTCGCGGAGAAGACGGTGAGGTGGAGGAGGACGAGAAGATGGGGGGGCCAAT
CAATGCGTCTCCTCCTAGCGAAGAAATCCATGGGAAGGGCGCGGACATGTCGAGAAGATG
GGGGAATCCCATGGAAATGTCGGCCGACGTGGACGATGCGAAGACCAAGACGACGGCGAC
GGCGGCGGCGGCGGAACTGACGGCGATGGCGATCTCTCCGATTCCGGGATTCACAGGCAG
AGGGGGCGCGGAGGCGTCGCTGAGGCGGTCTCTCGCGGCGGCGTGCGCGAGCATGGACTC
GTCGAGCCTGGCGCGCATCCTGTGCTCGTCCGGCAGCAGCAGCAGCAGCCACGCCACCCT
CGCCGCACGTCACTTCCGCCCGGCGCTTCTCGCCGCCGCCGAACCCGCGGCGCTCGTCGT
CCGCGCCGTCAGGGACCTGCTGGCCGGGACGGCGCCCATCAGGGACAGCGCGTGGGAGAG
CTGCGTGGAGCTGCTCAGCTGCGTGCCCAAGCTCGCCGTGGCGCCGTCGCCGGGCACGAT
GGAGCAGGCCAATCGCTTGGCCGAGGACTGGAAGGAGATGATCGGGAGGACCGAAAGTTG
CAGCATGAACCTCGGCCGGTTGGCTGTATGGGGCCTTCTCAACTTTCTTGTCTCCTACAA
CATTGTCCTGGAGTTCGACGCGGAAGAAATCATCCATTTCTTTGGCACTCTCCCGGACGA
CAAGAAGCAGTGTTGCATCTCCCTCTGCAAGTATCTTGGACTGATTGACAAGATGGCTGA
TTCAGTTGGTCATTTGATTGAACATGGACAACAACTTGTCGCTATCAGATTGGCATGCAC
TTTGAATTTGACAGACAAATACACTCCACTTTCCATCATGGAAGACTATATTCAGAATGC
TAAGGAGACTGCTCAAGAGATACTGAGCATGGAAAGTGATTCAGAGTCACTGAAACTGTC
CATGTCAAAGCAGGTCAATGCTCTAATATTGTCATGGAGGGTTGTTGGTGAATGCAATAT
TGACTCTGTCCATTGTGATAGAATTAAGGCAGAAATTACCCAGCTGTTGCATAAATATGC
AAACAAGAGGCACAGCCTAGAAGAACTTCCTTCTGATACTTCTAGTCCACATCAGAAACA
TCACCAAATGTCGCAAGAGAAGCACCACTGGCAGCAAAAGCATCGAGAGGAACAACAGCA
GCAGTTTCAAAATCAATCCAAGGAACAAGAACAAGAGAGAAGGATGCAAAAGTTACGAGA
GCTGAGGAAAAAGAAAAACAAGAGAACTCAGCGCAGGAAGCGGAAGCAAAATGCACAAGT
GATGAAGCAGCATCAATTTGAGAAACAGCGAAAACTATATCACGCTGGTTCATTTACCAA
TTCTCAAAGCTATGTCAGATCAGAAATTCACCACCACCTCAGCCAGCATTTTTCAGGAAC
TATAGGAACACCTGTTGCACCATATACACCTGTTGCACCATATACCGGACCTTTTTGGTA
GCTAGGGTCCATATATAATGGACCGGGTTCATCCTGCCTACATTCAACTATTCAAGTCAG
AGTAGTAGTACTTGATACCATTACTGTTTGACTGAACTGAAGATAAAGATAGTAG