Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0586800-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:21665280:21673555:-1 gene:Os03g0586800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS). (Os03t0586800-02)
Sequence

ATGGCGGAGTCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGC
GGCGAGGAGCCGCAGCAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAG
CAGGAGGAGGAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCA
GCTGCTAGTGGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACT
CAATATTATGAGAATCGCCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCC
TATCCCCATAAGTTCCTGGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGC
ATGAATGTTGGGGATAAGCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACC
AAGAGAGCGCAATCTTCCAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTT
CAAGTTTTTGCTGATGCCAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCAC
TCTACTCTGAAACGAGGTGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGA
GGGGAGCTCAGTATATTCCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATG
CCTCGACAGAAGAGTGAGGGAAGTGCTGTTCCCACTCCATGGGCTCCAGGAATGGGTAGG
AACATCGAAAAGTATGTTTTGAGGGACCAGGAAACCCGATATCGTCAACGATATCTTGAT
CTCATGGTAAACCATGAAGTGAGGCATATTTTCAAGACAAGATCAAAAGTTGTCTCTTTT
ATTCGGAAATTTCTTGATGGTCTTGACTTTTTAGAGGTGGAGACTCCAATGATGAACATG
ATTGCAGGTGGAGCAGCTGCAAGGCCTTTTGTCACACATCATAATGAGTTAAACATGAGG
CTTTATATGCGTATTGCTCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGAT
CGTGTTTATGAAATTGGGAAGCAGTTCAGGAATGAAGGAATTGACCTGACGCACAATCCT
GAATTCACAACATGTGAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTT
ACTGAAACCATGTTATCTGGTATGGTTAAGGAGTTGACAGGTGGCTACAAGATTAAATAT
CATGCTAACGGAGTTGAGAAACCACCAATAGAGATTGATTTCACACCTCCCTTCAGAAAG
ATAGACATGATTGAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCA
AGTGATGAAGCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCA
CCTCCCCAGACTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACA
TGTGTGAATCCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGG
CATAGGTCTCGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTG
TGCAATGCATATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAA
CTAAAGGATCGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACA
GCCCTTGAGTATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACA
ATGTTGCTGACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCT
CAAGATTAG

Peptide Sequence

PEP ID

Os03t0586800-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:21665280:21673555:-1 gene:Os03g0586800 transcript:Os03t0586800-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS). (Os03t0586800-02)
Sequence

MAESGSSGLEEKLAGLSAGCGEEPQQLSKNAKKREEKRKKQEEERRLKEEEKKKKAAATA
AASGEPPKESAADDEEMDPTQYYENRLKALDSLKATGVNPYPHKFLANITVADYIEKYKS
MNVGDKLVDVTECLAGRIMTKRAQSSKLLFYDLYGGGEKVQVFADARTSELEDNEFIKFH
STLKRGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLHMMPRQKSEGSAVPTPWAPGMGR
NIEKYVLRDQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFIRKFLDGLDFLEVETPMMNM
IAGGAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNP
EFTTCEFYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDFTPPFRK
IDMIEELEAMAKLNIPKDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEET
CVNPTFIINHPEIMSPLAKWHRSRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFEEQ
LKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKP
QD

Transcript Sequence

Transcript ID

Os03t0586800-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:21665280:21673555:-1 gene:Os03g0586800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS). (Os03t0586800-02)
Sequence

AGCGTCGCCTAACCCTAGCTAAACCCCCCTTCTCCCTTGCGCCTCCGCTTCGCGAGCCTC
ATCTCCTCGATCTCTTTCGATTCAGTGGAAAACCTAGGAGACCGGCGCGGCATGGCGGAG
TCGGGCTCGTCGGGCCTGGAGGAGAAGCTGGCGGGTCTCTCCGCGGGCTGCGGCGAGGAG
CCGCAGCAGCTCTCGAAGAATGCCAAGAAGAGGGAGGAGAAAAGGAAGAAGCAGGAGGAG
GAGCGCCGGTTGAAGGAGGAAGAGAAGAAGAAGAAGGCCGCTGCAACAGCAGCTGCTAGT
GGAGAGCCCCCGAAGGAATCTGCCGCCGACGATGAGGAAATGGATCCCACTCAATATTAT
GAGAATCGCCTCAAGGCACTTGATTCACTCAAGGCCACGGGTGTAAACCCCTATCCCCAT
AAGTTCCTGGCTAATATTACCGTAGCCGATTATATTGAGAAATACAAGAGCATGAATGTT
GGGGATAAGCTTGTTGACGTCACCGAGTGCCTAGCAGGGAGGATCATGACCAAGAGAGCG
CAATCTTCCAAGCTCTTATTTTATGATCTTTATGGTGGTGGTGAGAAAGTTCAAGTTTTT
GCTGATGCCAGGACCTCAGAGTTGGAAGATAATGAATTCATTAAGTTTCACTCTACTCTG
AAACGAGGTGATATTGTTGGTGTATGTGGTTATCCAGGAAAGAGCAAGAGAGGGGAGCTC
AGTATATTCCCAAAGAAAATTGTTGTGCTCTCCCCATGCCTTCATATGATGCCTCGACAG
AAGAGTGAGGGAAGTGCTGTTCCCACTCCATGGGCTCCAGGAATGGGTAGGAACATCGAA
AAGTATGTTTTGAGGGACCAGGAAACCCGATATCGTCAACGATATCTTGATCTCATGGTA
AACCATGAAGTGAGGCATATTTTCAAGACAAGATCAAAAGTTGTCTCTTTTATTCGGAAA
TTTCTTGATGGTCTTGACTTTTTAGAGGTGGAGACTCCAATGATGAACATGATTGCAGGT
GGAGCAGCTGCAAGGCCTTTTGTCACACATCATAATGAGTTAAACATGAGGCTTTATATG
CGTATTGCTCCTGAGCTCTATCTGAAGGAATTGGTTGTTGGGGGGCTGGATCGTGTTTAT
GAAATTGGGAAGCAGTTCAGGAATGAAGGAATTGACCTGACGCACAATCCTGAATTCACA
ACATGTGAATTTTATATGGCATATGCAGATTACAATGACTTGATAGAGCTTACTGAAACC
ATGTTATCTGGTATGGTTAAGGAGTTGACAGGTGGCTACAAGATTAAATATCATGCTAAC
GGAGTTGAGAAACCACCAATAGAGATTGATTTCACACCTCCCTTCAGAAAGATAGACATG
ATTGAAGAATTAGAGGCTATGGCTAAACTCAATATACCTAAAGATCTCTCAAGTGATGAA
GCAAACAAGTATTTGATAGATGCCTGTGCCAAATATGATGTCAAATGCCCACCTCCCCAG
ACTACAACACGGTTGCTTGATAAGCTAGTTGGCCATTTCTTGGAGGAGACATGTGTGAAT
CCCACGTTTATTATCAACCATCCAGAGATAATGAGTCCATTGGCAAAGTGGCATAGGTCT
CGACCTGGATTGACTGAGAGGTTTGAGCTCTTTGTTAACAAGCATGAGGTGTGCAATGCA
TATACAGAGTTAAATGATCCTGTTGTTCAGAGGCAACGGTTTGAGGAACAACTAAAGGAT
CGTCAATCTGGTGATGATGAAGCTATGGCATTGGATGAAACATTCTGCACAGCCCTTGAG
TATGGCCTACCACCGACTGGTGGTTGGGGATTGGGAATTGATCGCCTTACAATGTTGCTG
ACTGATTCTCAGAATATCAAGGAAGTTCTTCTATTCCCGGCTATGAAGCCTCAAGATTAG
ATATGTCCACAAAGCAGGAACCTGTCAGAAGGATTAAAGCAGACTGAATGCTGACTGAGA
GGATTTCAATTGGCCCTCGAGATGGAGGATTTGAAGGAAACTTATAATTTTGTTTTAATT
GTGCATGTGAGGTTTCCATGTCCTATTGTACTTTATTTTTGGAGAACATTGGTGGTCAGT
TAAGCAAACAGTTAATCTCGCTGCAAAGATATCAAGCGTAACTTATAAGATGACTTAAGT
TTGTGCAATTTCTGTGGCCTTACTTGAAAATGATAGCGCGTTATTTGCGGTCTTG