Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0582200-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:21416155:21420103:-1 gene:Os03g0582200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SCAMP4 description:SCAMP family protein. (Os03t0582200-01);SCAMP family protein. (Os03t0582200-02)
Sequence

ATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGGTCAAC
CCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCGGAGGC
GCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGCCTCTT
CCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAATGGAC
ACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGCTAAAC
AGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTGTGTTG
GAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATGAGATA
CCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGGTCCTG
TGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTCCCAAG
ATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATCTGTGG
TACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGTTTTTC
CTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAATTCTA
TTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATACTGTT
ATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGCTCAGC
ATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCGAGATG
AAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGA

Peptide Sequence

PEP ID

Os03t0582200-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:21416155:21420103:-1 gene:Os03g0582200 transcript:Os03t0582200-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SCAMP4 description:SCAMP family protein. (Os03t0582200-01);SCAMP family protein. (Os03t0582200-02)
Sequence

MAGRSRYDNPFEEGGGDEVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSAPPATHLSPL
PPEPADFYNDFSTPVDIPMDTSKDMKTREKELLAKEAELNRREKEIKRREEAAARAGIVL
EDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPK
IWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSIL
FVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGKEAEM
KREAARSAARAAF

Transcript Sequence

Transcript ID

Os03t0582200-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:21416155:21420103:-1 gene:Os03g0582200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SCAMP4 description:SCAMP family protein. (Os03t0582200-01);SCAMP family protein. (Os03t0582200-02)
Sequence

GCTGCTGCTGCTCTTCGTCTTTGCTGACCTCGGCACAGGCAGAGAGAGAAGCCAAGAAAA
GGGAAAAGAGAGGAAGAAGAGAGGGAAGAGGAGAAGGGAGACGCGCGGTGATCGGAGGTT
GATCCATGGCTGGCAGGTCGAGATACGACAACCCCTTCGAGGAGGGCGGCGGCGACGAGG
TCAACCCTTTCGCGGATAAAGCTTCTAAAGGAGGATCAGCAGGTCAATCCAGCTATTCCG
GAGGCGCATTCTATACAACACAATCACGCCCTAGTGCTCCACCGGCCACCCACCTTTCGC
CTCTTCCTCCTGAGCCAGCTGACTTCTACAATGACTTCTCGACCCCGGTGGATATTCCAA
TGGACACTAGCAAGGATATGAAAACAAGGGAGAAGGAACTTCTTGCAAAGGAAGCCGAGC
TAAACAGGCGAGAGAAGGAAATCAAAAGGAGAGAGGAGGCTGCAGCACGAGCTGGTATTG
TGTTGGAAGACAAAAACTGGCCTCCATTTTTCCCCATCATCCATAATGATATTGGCAATG
AGATACCTGTCCACCTGCAAAGAACACAGTATGTCGCATTTGCGTCACTCTTAGGATTGG
TCCTGTGCTTGTTTTGGAACATCATCTGTGTTACGGCTGCTTGGATTAAAGGGGAAGGTC
CCAAGATCTGGTTTCTTGCTGTCATCTATTTCATTCTTGGATGCCCAGGTGCCTACTATC
TGTGGTACCGACCACTTTACCGTGCCATGAGGAATGAGAGTGCTCTGAAATTTGGATGGT
TTTTCCTGTTCTACTTGGTCCACATCGCTTTCTGTGTGTATGCGGCTGTTTCTCCATCAA
TTCTATTTGTAGGGAAATCATTGACAGGAATTTTTCCAGCAATCAGCTTAATAGGCAATA
CTGTTATCGTTGGGGTGTTTTATTTTCTTGGATTCGCAATGTTTTGCCTGGAGTCGCTGC
TCAGCATGTGGGTTATTCAGCGTGTGTATCTTTACTTCCGGGGCAGCGGGAAAGAGGCCG
AGATGAAGCGCGAGGCTGCACGCAGCGCAGCGAGGGCGGCGTTTTGATGATGATGTACGT
ATGCGTGAAATGCATAGGAGTGTCCATTGTTTGAAAAATTACTGTGCGCTGTAAATTTGG
AGAGTGGTAGTAGAGTTGTTCTGCTTATGATATGTAGGATTTTGTGACTTGATTTGAGAT
TTCTTCCGCTGTCCATGTCCATTTCTTCTGATCTGTTCTAACTTCATGCTTTGCACTTTA
GGGATACTAGTATATATTTGAGAGAGAAAAATTGTGGCATTAGGACTTGCCAGATCTATG
TATGTAACAAAAAGCATACCTTTCTGCATGCCGTTTCTAAACATGGAGTTTGATTTTCAT
TGCC