Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0582100-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:21409003:21411259:-1 gene:Os03g0582100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0582100-01)
Sequence	ATGCCGCTCCTTCTCCCTCCTCCTCCCACACCCACACCACCATGCGCTTCCCGCGACCCG CTCCACGCTGCCCCTCGCCGGAGCCGCAGCCCGAGCACGAGCCGACCACCAAGCCGGCAC CGGCGCACCGCCTCCGCGCGGTCCACCCTGCCAGCCGCCGCCCGGGACCTCCTCGCCGAC GACCCCACGCCCCGCGCCTTCTCCGCGCTCCTCAAGGCCGCCTCCTCGTCCGCCTCCCCG CCTCGACGGCCCTCCTCCCTGGGCCTGGGCGCGCAGCTCCACGCGCAGGCCGTCGTGCGC GGCTTCCTCGGCGGCGACGACAGCACCATCCTGGCGACCGCCGTGCTCAGCTTCTACGCG TCGTGCCGGGAGCCCGACCTCGCGCGGAAGGTGTTCGACGGAATGCCGCGCAGGAACGCC GTCACCTGGAACGCGCTCATCAAGGGGTACGCGCAGGCGGGGCGCAGGGAGGAGGCCATT CTGCTGTTCCGAGACATGAAGAGGGAGGGCAGCCATGTTGCTCCGGACAGGTATACGTTC CCGGCGTTGCTTTCTGGCATCGGCCGAGAGGGTGGCTCTGGCCGCACGCTGGTTTCCTTG TATGCGGCTAGAAGGACATTGGAGGATGCAAAGGTCGCCTTTGATCAAGTGGGTTCTTCC GATCCAATCGTCTGGTCATCCATGATCTCTGCGTATGTGAACTGCGAGGAGGAAGAGGGT GCTCTGTTGATTTTCTTCAATATGTTGTGCCAAGACATTAAGCCAACTCAGTTTGTCTAC TCGACCGTGTTTTCTGTCTGTGGAAGAATGGGAATACTGGAGATGGGCAAGCAAGTTCAT GCCCACAGCCTGAAGAGCAATACTGAAAAGGATGCCGCAATGTTTAACGCGCTTTTGACC ATGTACTCGGATTGCGGATGCATTAATGACGCACAGAAAGTATTCTCTTCAAATGATTGC GTGAATGTAATTTCTTACAATTCAATGATTTCAGCTCTTGGACAGCACGGATATCCGAAA GAAGCACTTGAGCATTTCAGGCAGATGAAGTTTGCTGGTCTTATGCCTGACGAGGTAACC TTGTTAAATCTGATCTCTTCTTTCAACCATGCTGGTCTTGTTCATGAAGGCCTGCAGATG TTCAATTCCATGGTGGATATTGAAGGCATAAAACCAATGTATCAACATTATGCCTGTGTT GTTGACATGCTGGCTCGATCAGGAGAGATTGGCAAAGCCATGAAAACAATCAATGAAATG CCCTTTGAAGCTGAAGCACCGTTATGGAGGATTGTTCTTGGTGCATGCAGCAAGCACCGT GACATTGAAACTGGCAAGCGCATTGCAGAGATGCTGTTTGAGATGGAACCCTATGAAGCC ACAAATTATATACTTCTTGGTAATATTTATGCAAGGTTAGGAAGGTGGACAGAAGCAGAA AAGGTTAGAAGTCTGATGGGTGAGAGAGGTGTTTATAAGGATGATGCATTTAGCTGGATT GAGATGGGTCAGAGAACATATAGATTTGGTGTTGATGACCGATCACACCCCATCTCCAGA GAGATATATAGGAATTTAGATAGATTAATAAGTACTATCAAGGTTGCAGGCTATGTGCCT GATATCAGTTTTGCTGCACACAATATACAAAGGGATAGAAAGGAAGAATCATTGTATTAT CACTGTGAAAAATTGGCATTTGCTTTTGGGGACTTGGCTGCTCCTTCTGGAGGCACTCTC CGCATCATGAAGAACCTTCGTGTTTGTGGTGATTGTCATTGTGCGTACAAATACTTCTCC CTTGTTACAGGAAGAGAAATAATATTGAGAGACAATCAAAGGTTTCACCATTTCAACAGT GGTTTTTGTTCCTGTGGTGATTACTGGTAA

Peptide Sequence

PEP ID	Os03t0582100-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:21409003:21411259:-1 gene:Os03g0582100 transcript:Os03t0582100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0582100-01)
Sequence	MPLLLPPPPTPTPPCASRDPLHAAPRRSRSPSTSRPPSRHRRTASARSTLPAAARDLLAD DPTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYA SCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTF PALLSGIGREGGSGRTLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEG ALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLT MYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVT LLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEM PFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYARLGRWTEAE KVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLISTIKVAGYVP DISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKNLRVCGDCHCAYKYFS LVTGREIILRDNQRFHHFNSGFCSCGDYW

Transcript Sequence

Transcript ID	Os03t0582100-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:21409003:21411259:-1 gene:Os03g0582100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat domain containing protein. (Os03t0582100-01)
Sequence	GAGATGTAAAAAAAGATCAATAATGCCGCTCCTTCTCCCTCCTCCTCCCACACCCACACC ACCATGCGCTTCCCGCGACCCGCTCCACGCTGCCCCTCGCCGGAGCCGCAGCCCGAGCAC GAGCCGACCACCAAGCCGGCACCGGCGCACCGCCTCCGCGCGGTCCACCCTGCCAGCCGC CGCCCGGGACCTCCTCGCCGACGACCCCACGCCCCGCGCCTTCTCCGCGCTCCTCAAGGC CGCCTCCTCGTCCGCCTCCCCGCCTCGACGGCCCTCCTCCCTGGGCCTGGGCGCGCAGCT CCACGCGCAGGCCGTCGTGCGCGGCTTCCTCGGCGGCGACGACAGCACCATCCTGGCGAC CGCCGTGCTCAGCTTCTACGCGTCGTGCCGGGAGCCCGACCTCGCGCGGAAGGTGTTCGA CGGAATGCCGCGCAGGAACGCCGTCACCTGGAACGCGCTCATCAAGGGGTACGCGCAGGC GGGGCGCAGGGAGGAGGCCATTCTGCTGTTCCGAGACATGAAGAGGGAGGGCAGCCATGT TGCTCCGGACAGGTATACGTTCCCGGCGTTGCTTTCTGGCATCGGCCGAGAGGGTGGCTC TGGCCGCACGCTGGTTTCCTTGTATGCGGCTAGAAGGACATTGGAGGATGCAAAGGTCGC CTTTGATCAAGTGGGTTCTTCCGATCCAATCGTCTGGTCATCCATGATCTCTGCGTATGT GAACTGCGAGGAGGAAGAGGGTGCTCTGTTGATTTTCTTCAATATGTTGTGCCAAGACAT TAAGCCAACTCAGTTTGTCTACTCGACCGTGTTTTCTGTCTGTGGAAGAATGGGAATACT GGAGATGGGCAAGCAAGTTCATGCCCACAGCCTGAAGAGCAATACTGAAAAGGATGCCGC AATGTTTAACGCGCTTTTGACCATGTACTCGGATTGCGGATGCATTAATGACGCACAGAA AGTATTCTCTTCAAATGATTGCGTGAATGTAATTTCTTACAATTCAATGATTTCAGCTCT TGGACAGCACGGATATCCGAAAGAAGCACTTGAGCATTTCAGGCAGATGAAGTTTGCTGG TCTTATGCCTGACGAGGTAACCTTGTTAAATCTGATCTCTTCTTTCAACCATGCTGGTCT TGTTCATGAAGGCCTGCAGATGTTCAATTCCATGGTGGATATTGAAGGCATAAAACCAAT GTATCAACATTATGCCTGTGTTGTTGACATGCTGGCTCGATCAGGAGAGATTGGCAAAGC CATGAAAACAATCAATGAAATGCCCTTTGAAGCTGAAGCACCGTTATGGAGGATTGTTCT TGGTGCATGCAGCAAGCACCGTGACATTGAAACTGGCAAGCGCATTGCAGAGATGCTGTT TGAGATGGAACCCTATGAAGCCACAAATTATATACTTCTTGGTAATATTTATGCAAGGTT AGGAAGGTGGACAGAAGCAGAAAAGGTTAGAAGTCTGATGGGTGAGAGAGGTGTTTATAA GGATGATGCATTTAGCTGGATTGAGATGGGTCAGAGAACATATAGATTTGGTGTTGATGA CCGATCACACCCCATCTCCAGAGAGATATATAGGAATTTAGATAGATTAATAAGTACTAT CAAGGTTGCAGGCTATGTGCCTGATATCAGTTTTGCTGCACACAATATACAAAGGGATAG AAAGGAAGAATCATTGTATTATCACTGTGAAAAATTGGCATTTGCTTTTGGGGACTTGGC TGCTCCTTCTGGAGGCACTCTCCGCATCATGAAGAACCTTCGTGTTTGTGGTGATTGTCA TTGTGCGTACAAATACTTCTCCCTTGTTACAGGAAGAGAAATAATATTGAGAGACAATCA AAGGTTTCACCATTTCAACAGTGGTTTTTGTTCCTGTGGTGATTACTGGTAATGGATCAA TAAGCTATTCTGCAATTTCGCATCCTAGCAATGATTTAAGAGCTCTAATGACACCATATT TGTTTAGGTATGTGTTGAGCTTTCACGCAAAACAAAATTTCCATTCATTACATAGGAGCA CAATATACCTTTTTTTTTTACCATGTTCAATGCATGTCACATAAAAATATTAATGAGTAG AGTTGTAAATGATATTCATGTTGTTTTGCTACTTTCATTCGACATGTATGTTCCAAATTT AGGAAATAACAAATCAGTATAT