Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0579000-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:21224305:21225859:-1 gene:Os03g0579000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M50 domain containing protein. (Os03t0579000-01);Peptidase M50 domain containing protein. (Os03t0579000-02)
Sequence

ATGATTCGGATTACCACCCACCTCTCTCCCACCCTCAAGCCTCCTCCTCCTCTATCCCTC
CACCCCCACCTCCCTCTCCTCCGCCGCCACCGCCACCCCTCCTCCAGGCCCATCTCCGTC
TCCGCCGCCGCCCCGTCCGACCTCCTCGCCAGCGTCGAGTCCGTCGCCTCCGCCGCCTCC
GTCCTCGCCGCCATCGTCCTCGTCCACGAGTCGGGCCACTTCCTCGCCGCCACCTCCCGC
GGCATCCACGTCTCCCAGTTCTCCGTCGGCTTCGGCCCCGCCCTCGCGCGCTTCCGCCTC
GGCCCCGTCGAGTACGCGCTCCGCGCCATCCCGCTCGGGGGCTACGTCGGCTTCCCCGAC
GACGACCCGGACTCCGGCTTCCCGCCCGACGACCCCGACCTCCTCCGCAACCGCCCCGTC
CCCGACCGCCTCCTCGTCGTCTCCGCCGGCGTCGCCGCCAACCTCCTCTTCGCCTTCCTC
ATCGTCTACGCCCAGGCGCTCACCGTCGGCGTCCCCGTCCAGGCGCAGCTCCCCGGCGTC
CTCGTCCCCGAGGTCATCCCCGGCTCCGCCGCCGCCCGCGCCGGCCTCCTCCCCGGCGAT
GTCATCCTCTCCGTCCCCGGCCTCGCACCGGACCCCTCCGTTCCTGTCCTCGTCGACCTC
ATCAAGGCAAGCCCCAACAAGGATGTCTCCGTCACCGTCTCAAGAACAGGGCCAGGACCC
GGCGACCGGAGGTCCATCGACCTCACCGTCGTGCCGGACACCAGCGTCGACGGGACCGGC
CGCATTGGCGTGCAGCTCTCGCCCTACTTCCGTGTCACTCGCGTCCACCCCAACAACCTG
GCCGAGGCCACCGTCCTCGCCTTGCGCGAGTTCACCGCATTGAGCGCCACGGTGCTCGAC
GGCCTCAGGCAGACGTTCCTCAACTTCTCGCAGACGGCGGAGAAGGTGTCTGGTCCAGTT
GCAATCATTGCGGTTGGCGCAGAGGTGGCCAGGTCAAGCGCCGAGGGCTTGTTTCAGTTT
GCGGCTGTGATAAACCTCAACCTTGCTGCAATAAACTTGTTGCCATTGCCAGCATTAGAC
GGTGGGACGTTGGCGTTGATCCTTCTCGAGGCGGCCCGTGGTGGGCAGAAGATCCCCCGT
GAAATCGAACAGAGGATCATGTCGTCAGGTATACTGGTGGTACTCATGGTTGGCATGTTT
CTGATTGTCCGCGACACGCTCAATCTTGACTTCATCAAGGACATTTTGTGA

Peptide Sequence

PEP ID

Os03t0579000-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:21224305:21225859:-1 gene:Os03g0579000 transcript:Os03t0579000-02 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M50 domain containing protein. (Os03t0579000-01);Peptidase M50 domain containing protein. (Os03t0579000-02)
Sequence

MIRITTHLSPTLKPPPPLSLHPHLPLLRRHRHPSSRPISVSAAAPSDLLASVESVASAAS
VLAAIVLVHESGHFLAATSRGIHVSQFSVGFGPALARFRLGPVEYALRAIPLGGYVGFPD
DDPDSGFPPDDPDLLRNRPVPDRLLVVSAGVAANLLFAFLIVYAQALTVGVPVQAQLPGV
LVPEVIPGSAAARAGLLPGDVILSVPGLAPDPSVPVLVDLIKASPNKDVSVTVSRTGPGP
GDRRSIDLTVVPDTSVDGTGRIGVQLSPYFRVTRVHPNNLAEATVLALREFTALSATVLD
GLRQTFLNFSQTAEKVSGPVAIIAVGAEVARSSAEGLFQFAAVINLNLAAINLLPLPALD
GGTLALILLEAARGGQKIPREIEQRIMSSGILVVLMVGMFLIVRDTLNLDFIKDIL

Transcript Sequence

Transcript ID

Os03t0579000-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:21224305:21225859:-1 gene:Os03g0579000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Peptidase M50 domain containing protein. (Os03t0579000-01);Peptidase M50 domain containing protein. (Os03t0579000-02)
Sequence

ATCCACTCCTCCGCCTTCCTCCCCTCCCCCTCCCCCTCCCACCATGATTCGGATTACCAC
CCACCTCTCTCCCACCCTCAAGCCTCCTCCTCCTCTATCCCTCCACCCCCACCTCCCTCT
CCTCCGCCGCCACCGCCACCCCTCCTCCAGGCCCATCTCCGTCTCCGCCGCCGCCCCGTC
CGACCTCCTCGCCAGCGTCGAGTCCGTCGCCTCCGCCGCCTCCGTCCTCGCCGCCATCGT
CCTCGTCCACGAGTCGGGCCACTTCCTCGCCGCCACCTCCCGCGGCATCCACGTCTCCCA
GTTCTCCGTCGGCTTCGGCCCCGCCCTCGCGCGCTTCCGCCTCGGCCCCGTCGAGTACGC
GCTCCGCGCCATCCCGCTCGGGGGCTACGTCGGCTTCCCCGACGACGACCCGGACTCCGG
CTTCCCGCCCGACGACCCCGACCTCCTCCGCAACCGCCCCGTCCCCGACCGCCTCCTCGT
CGTCTCCGCCGGCGTCGCCGCCAACCTCCTCTTCGCCTTCCTCATCGTCTACGCCCAGGC
GCTCACCGTCGGCGTCCCCGTCCAGGCGCAGCTCCCCGGCGTCCTCGTCCCCGAGGTCAT
CCCCGGCTCCGCCGCCGCCCGCGCCGGCCTCCTCCCCGGCGATGTCATCCTCTCCGTCCC
CGGCCTCGCACCGGACCCCTCCGTTCCTGTCCTCGTCGACCTCATCAAGGCAAGCCCCAA
CAAGGATGTCTCCGTCACCGTCTCAAGAACAGGGCCAGGACCCGGCGACCGGAGGTCCAT
CGACCTCACCGTCGTGCCGGACACCAGCGTCGACGGGACCGGCCGCATTGGCGTGCAGCT
CTCGCCCTACTTCCGTGTCACTCGCGTCCACCCCAACAACCTGGCCGAGGCCACCGTCCT
CGCCTTGCGCGAGTTCACCGCATTGAGCGCCACGGTGCTCGACGGCCTCAGGCAGACGTT
CCTCAACTTCTCGCAGACGGCGGAGAAGGTGTCTGGTCCAGTTGCAATCATTGCGGTTGG
CGCAGAGGTGGCCAGGTCAAGCGCCGAGGGCTTGTTTCAGTTTGCGGCTGTGATAAACCT
CAACCTTGCTGCAATAAACTTGTTGCCATTGCCAGCATTAGACGGTGGGACGTTGGCGTT
GATCCTTCTCGAGGCGGCCCGTGGTGGGCAGAAGATCCCCCGTGAAATCGAACAGAGGAT
CATGTCGTCAGGTATACTGGTGGTACTCATGGTTGGCATGTTTCTGATTGTCCGCGACAC
GCTCAATCTTGACTTCATCAAGGACATTTTGTGATACTTGGGTGATGAAAACTTGGATCA
CAGTTAGTGAAGTCAAAAGTTTCAGACATTGGTTGGCCTCTGAAAAGGTTAGTAGTTGTG
CAATTGGGATTCATTTGCCCCATTTGTTGGGATTGCTCTAGCATTCTAGCTTCTTATACT
GATCATAGGTCCTTGTATTGTTATCTGAATGAAGCTCTAATGTTGCATTTAGTCGCATTT
CTAGATGAATGGGAACACTGAATTGTTGATATGTAAATTGCCCCCCTTGTGAAGC