Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0571900-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:20793274:20799805:-1 gene:Os03g0571900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phenolics efflux zero 1 description:Similar to transparent testa 12 protein. (Os03t0571900-01)
Sequence

ATGGGAAGCTCCGTCAAGGACGCCGGCGGCGGCAAGGAGGAGCAGCAGCAGCAGCTGGAG
AGCCCGCTGCTGGAGGCGGCGGTGTCGTCGGGCGGCGGCGATGGCGGGGGAGGGCACGGG
GTGAGCGGGGAGCTGGAGAGCATCCTGGGCGACGAGACGGTGCCGTGGGCGCGGCGGATG
TGGGCGGCGACGGGGGTGGAGATGCGGCTGATGCTGCGGTTGGCGGCGCCGGCCGTGCTG
GTGTACATGATCAACTACCTCATGTCCATGTCCACGCAGATCTTCTCCGGCCACCTCGGC
ACGCTCGAGCTCGCCGCCGCCTCCCTCGGCAACACCGGCATCCAGGTCTTCGCCTACGGC
CTCATGCTGGGGATGGGGAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCAC
AAGTACGACATGCTCGGCGTCTATCTGCAGCGATCCACCGTGCTGCTGATGGCCACCGGC
GTCCCGCTCGCCGTCATCTACGCCTTCTCCCGCCCCATCCTTGTCCTCCTCGGCGAGTCC
CCGGAGATCGCCAGCGCCGCCGCCGTCTTCGTCTACGGCCTCGTCCCGCAGATCTTCGCC
TACGCCGCCAACTTCCCCATCCAGAAGTTCATGCAGGCGCAGAGCATCATGGCACCCAGC
GCCTACATCTCCGCCGCCACGCTCGCCTTCCACCTCGTCCTCAGCTACCTCGTCGTCTAC
CAGTTCGGTCTTGGCCTTCTTGGCGCCTCGCTAATGCTCAGCATCAGCTGGTGGGTCATC
GTCGTCGCGCAGTTCATCTACATCGTCACCAGCCGCCGGTGCAGGCTCACTTGGACCGGC
TTCTCCATGCTGGCCTTCTCCGGCTTGCCCGACTTCTTCAAGCTGTCCCTCGCCTCCGCC
GTCATGCTCTGCCTCGAGACCTGGTACTTCCAGATCCTCGTCCTCATCGCCGGCCTCCTC
AAGGACCCTGAGATGGCACTTGCCTCGCTCTCTGTCTGCATGACAATTTCTGGATGGGTG
TTCATGATCTCAGTCGGATTCAACGCAGCAGCCAGCGTGAGGGTGAGCAATGAGCTCGGT
GCTGGGAACCCCAAGTCGGCGGCATTCTCGGTGGTGGTGGTGACGGTGCTGTCGTTCTTT
CTGTCGGTGGTAATCTCGCTTGTCATCCTGCTGTGCCGGGACTACATCAGCTACATCTTC
ACCGACGGCGAGGACGTGGCGACGGCGGTGTCCAAGCTCACGCCGCTGCTGGCGCTCACC
CTCATCCTCAACGGCATCCAGCCCGTCCTGTCAGGTGTGGCCGTGGGCTGCGGATGGCAA
GCGTTCGTGGCCTACGTCAACGTAGGCTGCTACTACATCGTCGGTATCCCCCTCGGCTGC
CTCCTCGGCTTCTACTTCGACCTCGGCGCTGCGGGTATTTGGAGCGGTATGATAGGAGGT
ACACTGATGCAGACCTTGATCCTTATGTGGGTCACCTTCAGGACCAACTGGAACAGAGAG
GTGGAAGAAGCCATGAAAAGGTTGAACAAGTGGGAAGATAAGACACCTCTGTTGTCAGAA
TAA

Peptide Sequence

PEP ID

Os03t0571900-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:20793274:20799805:-1 gene:Os03g0571900 transcript:Os03t0571900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phenolics efflux zero 1 description:Similar to transparent testa 12 protein. (Os03t0571900-01)
Sequence

MGSSVKDAGGGKEEQQQQLESPLLEAAVSSGGGDGGGGHGVSGELESILGDETVPWARRM
WAATGVEMRLMLRLAAPAVLVYMINYLMSMSTQIFSGHLGTLELAAASLGNTGIQVFAYG
LMLGMGSAVETLCGQAYGAHKYDMLGVYLQRSTVLLMATGVPLAVIYAFSRPILVLLGES
PEIASAAAVFVYGLVPQIFAYAANFPIQKFMQAQSIMAPSAYISAATLAFHLVLSYLVVY
QFGLGLLGASLMLSISWWVIVVAQFIYIVTSRRCRLTWTGFSMLAFSGLPDFFKLSLASA
VMLCLETWYFQILVLIAGLLKDPEMALASLSVCMTISGWVFMISVGFNAAASVRVSNELG
AGNPKSAAFSVVVVTVLSFFLSVVISLVILLCRDYISYIFTDGEDVATAVSKLTPLLALT
LILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYIVGIPLGCLLGFYFDLGAAGIWSGMIGG
TLMQTLILMWVTFRTNWNREVEEAMKRLNKWEDKTPLLSE

Transcript Sequence

Transcript ID

Os03t0571900-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:20793274:20799805:-1 gene:Os03g0571900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:phenolics efflux zero 1 description:Similar to transparent testa 12 protein. (Os03t0571900-01)
Sequence

GTATACTGTATATAGCCCCCACACACAGCAACGATCTCTCTGCCTCTCCTCCTCTCTCGC
TCTGCAGCCACCCTCACGCACAGAGCCGACACGCATACGACACACATGGGAAGCTCCGTC
AAGGACGCCGGCGGCGGCAAGGAGGAGCAGCAGCAGCAGCTGGAGAGCCCGCTGCTGGAG
GCGGCGGTGTCGTCGGGCGGCGGCGATGGCGGGGGAGGGCACGGGGTGAGCGGGGAGCTG
GAGAGCATCCTGGGCGACGAGACGGTGCCGTGGGCGCGGCGGATGTGGGCGGCGACGGGG
GTGGAGATGCGGCTGATGCTGCGGTTGGCGGCGCCGGCCGTGCTGGTGTACATGATCAAC
TACCTCATGTCCATGTCCACGCAGATCTTCTCCGGCCACCTCGGCACGCTCGAGCTCGCC
GCCGCCTCCCTCGGCAACACCGGCATCCAGGTCTTCGCCTACGGCCTCATGCTGGGGATG
GGGAGCGCGGTGGAGACGCTGTGCGGGCAGGCGTACGGCGCGCACAAGTACGACATGCTC
GGCGTCTATCTGCAGCGATCCACCGTGCTGCTGATGGCCACCGGCGTCCCGCTCGCCGTC
ATCTACGCCTTCTCCCGCCCCATCCTTGTCCTCCTCGGCGAGTCCCCGGAGATCGCCAGC
GCCGCCGCCGTCTTCGTCTACGGCCTCGTCCCGCAGATCTTCGCCTACGCCGCCAACTTC
CCCATCCAGAAGTTCATGCAGGCGCAGAGCATCATGGCACCCAGCGCCTACATCTCCGCC
GCCACGCTCGCCTTCCACCTCGTCCTCAGCTACCTCGTCGTCTACCAGTTCGGTCTTGGC
CTTCTTGGCGCCTCGCTAATGCTCAGCATCAGCTGGTGGGTCATCGTCGTCGCGCAGTTC
ATCTACATCGTCACCAGCCGCCGGTGCAGGCTCACTTGGACCGGCTTCTCCATGCTGGCC
TTCTCCGGCTTGCCCGACTTCTTCAAGCTGTCCCTCGCCTCCGCCGTCATGCTCTGCCTC
GAGACCTGGTACTTCCAGATCCTCGTCCTCATCGCCGGCCTCCTCAAGGACCCTGAGATG
GCACTTGCCTCGCTCTCTGTCTGCATGACAATTTCTGGATGGGTGTTCATGATCTCAGTC
GGATTCAACGCAGCAGCCAGCGTGAGGGTGAGCAATGAGCTCGGTGCTGGGAACCCCAAG
TCGGCGGCATTCTCGGTGGTGGTGGTGACGGTGCTGTCGTTCTTTCTGTCGGTGGTAATC
TCGCTTGTCATCCTGCTGTGCCGGGACTACATCAGCTACATCTTCACCGACGGCGAGGAC
GTGGCGACGGCGGTGTCCAAGCTCACGCCGCTGCTGGCGCTCACCCTCATCCTCAACGGC
ATCCAGCCCGTCCTGTCAGGTGTGGCCGTGGGCTGCGGATGGCAAGCGTTCGTGGCCTAC
GTCAACGTAGGCTGCTACTACATCGTCGGTATCCCCCTCGGCTGCCTCCTCGGCTTCTAC
TTCGACCTCGGCGCTGCGGGTATTTGGAGCGGTATGATAGGAGGTACACTGATGCAGACC
TTGATCCTTATGTGGGTCACCTTCAGGACCAACTGGAACAGAGAGGTGGAAGAAGCCATG
AAAAGGTTGAACAAGTGGGAAGATAAGACACCTCTGTTGTCAGAATAAGAACAAAACAAA
AGAAAAGGCTATTGTGGTTATTACACTGAGAGCCTACATGCCTAGAAGAAATGGGATTAT
GTGGGAAGTTCATAAAAGGAGATTTTTCATCGTGGAATTCATCATTGAGCCACAATGCTC
TGTTACTTCTCGTTTCTACTAGCGTACTAGTATTATTTCGTTTTTGATGATCCTGTTTTA
CAGTTATGATGATGGAGATAATTTGATCATTTATTGAACT