Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0563100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:20240367:20243969:1 gene:Os03g0563100 gene_biotype:protein_coding transcript_biotype:protein_coding description:D-arabinono-1,4-lactone oxidase domain containing protein. (Os03t0563100-01)
Sequence

ATGAGCCTCGAGCACAACAAGATGATGATCACTCTCGTGCGGTTGCTGCCGCTCGTCCTC
GTCGTGGCATTGGCGTGGCCTGCGGCTGAGGCGCCGGCCGCCGCGAGCCCCCCACCGGAC
CCGGTGCAGTGCTCGTCCGGCAGCGGCACGGCCGACTGCACCGTGTCGAGCGCGTACGGC
GTCTTCCCGGACCGGTCGACGTGCCGCGCGGCCGCCGCCGTGTATCCTTCTACGGAGGAG
GAGCTGGTCCGGGCCGTGGCCAACGCGACAGCGTCCGGGACCAAGATGAAGGTGGCCACC
AGGTACTCCCACAGCATCCCGCAGCTGGCCTGCCCCGGCGACGGCGACGGCGAGGGCCTC
GTCATCAGCACTAGGCGGCTCAACCGCGTGGTGGCCGTCGACGCCGGCAGGATGGAGGTG
ACGGTGGAGAGCGGCATATCGCTGCGGGAGCTCATCGCCGAGGCGGGCAAGGCCGGGATG
GCGCTGCCGTACGCGCCCTACTGGTGGGGGCTCACCGTGGGCGGCATGCTCGGCACGGGC
GCGCACGGCAGCTCGCTGTGGGGGAAAGGCAGCGCCGTGCACGAGTACGTGGTCGGGATG
CGCATCGTCACGCCGGCGCCCGCCGCCGACGGGTACGCCAAGGTGCGGGTGCTCACCGCG
GCCGACCCGGAGCTTGACGCCGCCAAGGTCTCCCTAGGCGTCCTAGGAGTCATTTCTCAG
GTGACTCTGGCGCTGCAACCTCTGTTCAAGCGTTCTGTGACGTTCATGGAGCGCGACGAC
GACGACCTGGCGGACCAGGTGACCAAGTTCGGCTACCAGCACGAGTTCGCCGACATCGCC
TGGTACCCGGGCATCGGGCGAGCGGTGTACCGCGTGGACGACCGGCTGCCGATGAACGCC
TCCGGCGAGGGCGTCCTCGACTTCATCGGCTTCCGTGCCACGCCGAGACTTCTGATCCGT
ACTAACCGCCTCGCGGAGGAGCTGTTCGAGCGCGCGGGCAACGGCAACGGCAAGTGCGTG
ACGTCAAGGGTCACCCACGCGGCGCTCTCGTCGGCCGGGTACGGGCTGATGCGGCGGAGC
GGCGGGCTGTTCACCGGGTACCCGGTGGTGGGCCCGCAGCACCTGATGCAGGCGTCCGGC
GGCTGCATCACCGGGCCGGAGGACGCGCTCCTGACGGCGTGCCCGTGGGACCCCCGGGTG
AGGGGCTCCAGCTTCTTCCACCAGACCACCTTCAGCCTGCCGGTGAGCCGTGCCGGGGCG
TTCGTCGAGGAGGTCCGGCGGCTCCGTGACATGAACCCCAAAGCGCTCTGCGGTGTGGAG
CTCTACGACGGAATCCTGATCCGCTACGTCAAGGCGTCGACCGCGCACCTCGGGAAACCG
GCGGCAGGAGGCGGCCAGTCGGACGACATGGTGGACTTCGACATGACGTACTACCGCAGC
CGCGACCCCAACAGGGCGCGGCTGTTCGAGGATGTCCTGGAGGAGATCGAGCAGATGGGG
GTGTTCAAGTACGGCGGCCTGCCGCACTGGGGCAAGAACCGCAACCTCGCCTTCGTCGGC
GCCGCCCGTAAGTACCCGCGCATCGGCGAGTTCCTCCGCATCAAGGACGCCTATGACCCC
GACGGCCTCTTCTCCAGCGACTGGAGCGACATGATGCTTGGCATTGGCGGCCGTGCGCCG
ACCAGGGACGCGCCGGGTTGCGCGCTGGAGGGGATGTGTGTGTGCTCGCAGGACGCGCAC
TGCGCGCCGGAGCAAGGTTATGTGTGTCGCCCCGGCAAGGTGTACAAGGATGCCAGGGTC
TGCACCAAGGTGTAG

Peptide Sequence

PEP ID

Os03t0563100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:20240367:20243969:1 gene:Os03g0563100 transcript:Os03t0563100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:D-arabinono-1,4-lactone oxidase domain containing protein. (Os03t0563100-01)
Sequence

MSLEHNKMMITLVRLLPLVLVVALAWPAAEAPAAASPPPDPVQCSSGSGTADCTVSSAYG
VFPDRSTCRAAAAVYPSTEEELVRAVANATASGTKMKVATRYSHSIPQLACPGDGDGEGL
VISTRRLNRVVAVDAGRMEVTVESGISLRELIAEAGKAGMALPYAPYWWGLTVGGMLGTG
AHGSSLWGKGSAVHEYVVGMRIVTPAPAADGYAKVRVLTAADPELDAAKVSLGVLGVISQ
VTLALQPLFKRSVTFMERDDDDLADQVTKFGYQHEFADIAWYPGIGRAVYRVDDRLPMNA
SGEGVLDFIGFRATPRLLIRTNRLAEELFERAGNGNGKCVTSRVTHAALSSAGYGLMRRS
GGLFTGYPVVGPQHLMQASGGCITGPEDALLTACPWDPRVRGSSFFHQTTFSLPVSRAGA
FVEEVRRLRDMNPKALCGVELYDGILIRYVKASTAHLGKPAAGGGQSDDMVDFDMTYYRS
RDPNRARLFEDVLEEIEQMGVFKYGGLPHWGKNRNLAFVGAARKYPRIGEFLRIKDAYDP
DGLFSSDWSDMMLGIGGRAPTRDAPGCALEGMCVCSQDAHCAPEQGYVCRPGKVYKDARV
CTKV

Transcript Sequence

Transcript ID

Os03t0563100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:20240367:20243969:1 gene:Os03g0563100 gene_biotype:protein_coding transcript_biotype:protein_coding description:D-arabinono-1,4-lactone oxidase domain containing protein. (Os03t0563100-01)
Sequence

AATTAGAATGAGCCTCGAGCACAACAAGATGATGATCACTCTCGTGCGGTTGCTGCCGCT
CGTCCTCGTCGTGGCATTGGCGTGGCCTGCGGCTGAGGCGCCGGCCGCCGCGAGCCCCCC
ACCGGACCCGGTGCAGTGCTCGTCCGGCAGCGGCACGGCCGACTGCACCGTGTCGAGCGC
GTACGGCGTCTTCCCGGACCGGTCGACGTGCCGCGCGGCCGCCGCCGTGTATCCTTCTAC
GGAGGAGGAGCTGGTCCGGGCCGTGGCCAACGCGACAGCGTCCGGGACCAAGATGAAGGT
GGCCACCAGGTACTCCCACAGCATCCCGCAGCTGGCCTGCCCCGGCGACGGCGACGGCGA
GGGCCTCGTCATCAGCACTAGGCGGCTCAACCGCGTGGTGGCCGTCGACGCCGGCAGGAT
GGAGGTGACGGTGGAGAGCGGCATATCGCTGCGGGAGCTCATCGCCGAGGCGGGCAAGGC
CGGGATGGCGCTGCCGTACGCGCCCTACTGGTGGGGGCTCACCGTGGGCGGCATGCTCGG
CACGGGCGCGCACGGCAGCTCGCTGTGGGGGAAAGGCAGCGCCGTGCACGAGTACGTGGT
CGGGATGCGCATCGTCACGCCGGCGCCCGCCGCCGACGGGTACGCCAAGGTGCGGGTGCT
CACCGCGGCCGACCCGGAGCTTGACGCCGCCAAGGTCTCCCTAGGCGTCCTAGGAGTCAT
TTCTCAGGTGACTCTGGCGCTGCAACCTCTGTTCAAGCGTTCTGTGACGTTCATGGAGCG
CGACGACGACGACCTGGCGGACCAGGTGACCAAGTTCGGCTACCAGCACGAGTTCGCCGA
CATCGCCTGGTACCCGGGCATCGGGCGAGCGGTGTACCGCGTGGACGACCGGCTGCCGAT
GAACGCCTCCGGCGAGGGCGTCCTCGACTTCATCGGCTTCCGTGCCACGCCGAGACTTCT
GATCCGTACTAACCGCCTCGCGGAGGAGCTGTTCGAGCGCGCGGGCAACGGCAACGGCAA
GTGCGTGACGTCAAGGGTCACCCACGCGGCGCTCTCGTCGGCCGGGTACGGGCTGATGCG
GCGGAGCGGCGGGCTGTTCACCGGGTACCCGGTGGTGGGCCCGCAGCACCTGATGCAGGC
GTCCGGCGGCTGCATCACCGGGCCGGAGGACGCGCTCCTGACGGCGTGCCCGTGGGACCC
CCGGGTGAGGGGCTCCAGCTTCTTCCACCAGACCACCTTCAGCCTGCCGGTGAGCCGTGC
CGGGGCGTTCGTCGAGGAGGTCCGGCGGCTCCGTGACATGAACCCCAAAGCGCTCTGCGG
TGTGGAGCTCTACGACGGAATCCTGATCCGCTACGTCAAGGCGTCGACCGCGCACCTCGG
GAAACCGGCGGCAGGAGGCGGCCAGTCGGACGACATGGTGGACTTCGACATGACGTACTA
CCGCAGCCGCGACCCCAACAGGGCGCGGCTGTTCGAGGATGTCCTGGAGGAGATCGAGCA
GATGGGGGTGTTCAAGTACGGCGGCCTGCCGCACTGGGGCAAGAACCGCAACCTCGCCTT
CGTCGGCGCCGCCCGTAAGTACCCGCGCATCGGCGAGTTCCTCCGCATCAAGGACGCCTA
TGACCCCGACGGCCTCTTCTCCAGCGACTGGAGCGACATGATGCTTGGCATTGGCGGCCG
TGCGCCGACCAGGGACGCGCCGGGTTGCGCGCTGGAGGGGATGTGTGTGTGCTCGCAGGA
CGCGCACTGCGCGCCGGAGCAAGGTTATGTGTGTCGCCCCGGCAAGGTGTACAAGGATGC
CAGGGTCTGCACCAAGGTGTAGTCCATGTAGTTTGATCACGTCGGACACACGCTTCAGTG
AATTCTTATGGCGATTAGTTACCGAGCATTCGACAGTAAAAGCAACTGAAGAAAGGGTGA
TTCT