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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0438100-02
CDS Infomation

cds chromosome:IRGSP-1.0:3:18485719:18486874:-1 gene:Os03g0438100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALLENE OXIDE CYCLASE description:Allene oxide cyclase, Biosynthesis of jasmonic acid, Defence response (Os03t0438100-01);Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase). (Os03t0438100-02)
Sequence

ATGGCCGCCGCCGCCCCCTCGCGAGTCTCCGTCAGGGCCGCGGCGCCCGGGCAAACGGGG
GGCTTCGCCAAGATCCGGCCGCAGGTGGTGGTGGCAGCGGCGGCGAGGTCGGCCGGGGTG
AGCGGCCGCAGGGCGAGGAGCGTTCGGGCGTCGCTGTTCTCGCCGAAGCCGGCGACGCCC
AAGGACGCGAGGCCGGCCAAGGTGCAGGAGATGTTCGTGTACGAGATCAACGAGCGCGAC
CGCGAGAGCCCCGCCTACCTCCGCCTCAGCGCCAAGCAGACGGAGAACGCCCTCGGCGAT
CTCGTCCCCTTCACCAACAAGCTGTACAGCGGAAGCCTGGACAAGCGGCTGGGGATCTCG
GCGGGGATCTGCATCCTGATCCAGCACGTGCCGGAGCGCAACGGCGACCGCTACGAGGCC
ATCTACAGCTTCTACTTCGGCGACTACGGCCACATCTCCGTGCAGGGCCCGTACCTGACC
TACGAGGAGTCCTACCTCGCCGTCACCGGCGGCTCCGGCGTCTTCGAAGGCGCCTACGGC
CAGGTCAAGCTCAACCAGATCGTCTTCCCCTTCAAGATCTTCTACACCTTCTACCTCAAG
GGCATCCCCGACCTGCCGCGGGAGCTGCTCTGCACGCCCGTCCCGCCGTCCCCGACCGTC
GAGCCAACGCCAGCCGCCAAGGCCACCGAGCCCCACGCCTGCCTCAACAACTTCACCAAC
TAG

Peptide Sequence

PEP ID

Os03t0438100-02
PEP Infomation

pep chromosome:IRGSP-1.0:3:18485719:18486874:-1 gene:Os03g0438100 transcript:Os03t0438100-02 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALLENE OXIDE CYCLASE description:Allene oxide cyclase, Biosynthesis of jasmonic acid, Defence response (Os03t0438100-01);Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase). (Os03t0438100-02)
Sequence

MAAAAPSRVSVRAAAPGQTGGFAKIRPQVVVAAAARSAGVSGRRARSVRASLFSPKPATP
KDARPAKVQEMFVYEINERDRESPAYLRLSAKQTENALGDLVPFTNKLYSGSLDKRLGIS
AGICILIQHVPERNGDRYEAIYSFYFGDYGHISVQGPYLTYEESYLAVTGGSGVFEGAYG
QVKLNQIVFPFKIFYTFYLKGIPDLPRELLCTPVPPSPTVEPTPAAKATEPHACLNNFTN

Transcript Sequence

Transcript ID

Os03t0438100-02
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:18485719:18486874:-1 gene:Os03g0438100 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALLENE OXIDE CYCLASE description:Allene oxide cyclase, Biosynthesis of jasmonic acid, Defence response (Os03t0438100-01);Similar to Allene oxide cyclase precursor (EC 5.3.99.6) (Allene oxide cylase). (Os03t0438100-02)
Sequence

AACAGCTTGATTGACCATGGCCGCCGCCGCCCCCTCGCGAGTCTCCGTCAGGGCCGCGGC
GCCCGGGCAAACGGGGGGCTTCGCCAAGATCCGGCCGCAGGTGGTGGTGGCAGCGGCGGC
GAGGTCGGCCGGGGTGAGCGGCCGCAGGGCGAGGAGCGTTCGGGCGTCGCTGTTCTCGCC
GAAGCCGGCGACGCCCAAGGACGCGAGGCCGGCCAAGGTGCAGGAGATGTTCGTGTACGA
GATCAACGAGCGCGACCGCGAGAGCCCCGCCTACCTCCGCCTCAGCGCCAAGCAGACGGA
GAACGCCCTCGGCGATCTCGTCCCCTTCACCAACAAGCTGTACAGCGGAAGCCTGGACAA
GCGGCTGGGGATCTCGGCGGGGATCTGCATCCTGATCCAGCACGTGCCGGAGCGCAACGG
CGACCGCTACGAGGCCATCTACAGCTTCTACTTCGGCGACTACGGCCACATCTCCGTGCA
GGGCCCGTACCTGACCTACGAGGAGTCCTACCTCGCCGTCACCGGCGGCTCCGGCGTCTT
CGAAGGCGCCTACGGCCAGGTCAAGCTCAACCAGATCGTCTTCCCCTTCAAGATCTTCTA
CACCTTCTACCTCAAGGGCATCCCCGACCTGCCGCGGGAGCTGCTCTGCACGCCCGTCCC
GCCGTCCCCGACCGTCGAGCCAACGCCAGCCGCCAAGGCCACCGAGCCCCACGCCTGCCT
CAACAACTTCACCAACTAGCTCAACCCGCGCTGTACATCACTTCCAAGTTCCAATTGCTA
CTGTTACTACTCTGCCAATAATTGATGGAGATGCAGATCGAGCTGCCTGATTAGTTTAGT
GTTAATTGCGGCATGTGCGGTGTGTATCGTATCACTGATAAGGAAGAGGAATCGAGGACA
AGATATTTGTTTCCTCCCTGCGATGAGCCGATGAACTGATCCGAACAAGAAGAGGCTTCT
TGGTAGTAGGTGGATTGGAATATCGAAATGATATGATTGTGATCCGCAACTACAACGACC
GCCACTACGGAGAGCTCATGCTATTTGTTTGTTTGTTTT