Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0433200-00
CDS Infomation	cds chromosome:IRGSP-1.0:3:18238724:18240535:-1 gene:Os03g0433200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORT ROOT GENE 2 description:Similar to Protein SHORT-ROOT 2. (Os03t0433200-00)
Sequence	ATGGATACCCTCTTCAGGTTGGTTAGCCTCCACCACCATCACCACCACCAGCACGCGGCC TCACCGTCGCCGCCGGACCAGCCGCACAAGTCGTACCCCTCCTCGCGAGGGAGCACCAGC TCCCCCTCCTCCCACCACACCCACAACCACACCTACTACCACCACTCCCACTCCCACTAC AACAATAATAGCAACACCAACTACTATTACCAGGGTGGTGGAGGCGGCGGCGGAGGGTAC TACTACGCGGAGGAGCAGCAGCCGGCGGCGTACCTAGAAGAATGCGGCAACGGCCACCAG TTTTACATGGATGAAGACTTCTCCTCCTCGTCTTCCTCCCGCCAGTTCCACTCGGGAACG GGCGCGCCGTCGTCGGCGCCGGTGCCTCCTCCTCCGTCGGCGACGACGTCGTCCGCGGGC GGGCACGGGCTGTTTGAGGCGGCGGACTTCTCGTTCCCGCAGGTTGATATCAGCCTCGAC TTCGGCGGCTCTCCGGCCGTTCCGTCGTCGTCCGGTGCTGGCGCCGGCGCCGGGGCAGCG CCGTCGTCGTCGGGGAGGTGGGCGGCGCAGCTGCTGATGGAGTGCGCGCGCGCGGTGGCG GGGCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCTCAACGAGCTGGCCTCGCCG TACGGCGACGTCGACCAGAAGCTGGCCTCCTACTTCCTGCAGGGCCTCTTCGCGCGGCTC ACCACCTCCGGCCCGCGCACGCTGCGGACGCTCGCCACCGCGTCGGACCGGAACGCGTCG TTCGACTCCACGCGCCGCACGGCGCTCAAGTTCCAGGAGCTCAGCCCGTGGACGCCGTTC GGGCACGTCGCCGCCAACGGCGCCATACTCGAGTCGTTCCTGGAGGCCGCGGCGGCGGGC GCCGCCGCCTCCTCCTCCTCGTCGTCTTCATCGTCGACGCCGCCGACGCGGCTGCACATC CTCGACCTGAGCAACACGTTCTGCACGCAGTGGCCGACCCTCCTGGAGGCGCTGGCCACC CGGTCCTCGGACGACACGCCGCACCTGTCCATCACCACCGTCGTGCCCACGGCGGCGCCG TCGGCGGCCGCGCAGCGCGTGATGCGGGAGATCGGGCAGCGCCTCGAGAAGTTCGCGCGG CTGATGGGCGTCCCGTTCAGCTTCCGCGCCGTGCACCACTCGGGGGACCTGGCCGACCTC GACCTCGCCGCGCTGGACCTCCGCGAGGGCGGCGCCACCGCCGCGCTCGCCGTCAACTGC GTAAACGCGCTGCGCGGGGTCGCGCGGGGGCGCGACGCGTTCGTGGCGTCGCTCCGGCGC CTGGAGCCGCGCGTGGTCACCGTCGTGGAGGAGGAGGCCGACCTGGCGGCGCCGGAGGCG GACGCGTCGTCGGAGGCCGACACCGACGCCGCGTTCGTCAAGGTGTTCGGCGAGGGCCTC CGCTTCTTCTCGGCGTACATGGACTCGCTGGAGGAGAGCTTCCCCAAGACAAGCAACGAG AGGCTGTCACTGGAGAGGGCGGTCGGCCGTGCCATCGTCGACCTCGTGTCATGCCCGGCC TCCCAGTCCGCCGAGCGCCGGGAGACCGCCGCGTCGTGGGCGCGGCGCATGCGGTCGGCG GGGTTCTCGCCGGCGGCATTCAGCGAGGACGTCGCCGACGACGTGCGGTCGCTTCTCCGG CGGTACAAGGAGGGCTGGTCGATGCGGGACGCCGGCGGTGCCACGGACGACGCCGCCGGC GCCGCTGCTGCCGGAGCGTTCCTTGCGTGGAAGGAGCAGCCTGTCGTGTGGGCGAGCGCG TGGAAGCCATGA

Peptide Sequence

PEP ID	Os03t0433200-00
PEP Infomation	pep chromosome:IRGSP-1.0:3:18238724:18240535:-1 gene:Os03g0433200 transcript:Os03t0433200-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORT ROOT GENE 2 description:Similar to Protein SHORT-ROOT 2. (Os03t0433200-00)
Sequence	MDTLFRLVSLHHHHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHNHTYYHHSHSHY NNNSNTNYYYQGGGGGGGGYYYAEEQQPAAYLEECGNGHQFYMDEDFSSSSSSRQFHSGT GAPSSAPVPPPPSATTSSAGGHGLFEAADFSFPQVDISLDFGGSPAVPSSSGAGAGAGAA PSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARL TTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAG AAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAP SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNC VNALRGVARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEGL RFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSCPASQSAERRETAASWARRMRSA GFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATDDAAGAAAAGAFLAWKEQPVVWASA WKP

Transcript Sequence

Transcript ID	Os03t0433200-00
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:18238724:18240535:-1 gene:Os03g0433200 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:SHORT ROOT GENE 2 description:Similar to Protein SHORT-ROOT 2. (Os03t0433200-00)
Sequence	ATGGATACCCTCTTCAGGTTGGTTAGCCTCCACCACCATCACCACCACCAGCACGCGGCC TCACCGTCGCCGCCGGACCAGCCGCACAAGTCGTACCCCTCCTCGCGAGGGAGCACCAGC TCCCCCTCCTCCCACCACACCCACAACCACACCTACTACCACCACTCCCACTCCCACTAC AACAATAATAGCAACACCAACTACTATTACCAGGGTGGTGGAGGCGGCGGCGGAGGGTAC TACTACGCGGAGGAGCAGCAGCCGGCGGCGTACCTAGAAGAATGCGGCAACGGCCACCAG TTTTACATGGATGAAGACTTCTCCTCCTCGTCTTCCTCCCGCCAGTTCCACTCGGGAACG GGCGCGCCGTCGTCGGCGCCGGTGCCTCCTCCTCCGTCGGCGACGACGTCGTCCGCGGGC GGGCACGGGCTGTTTGAGGCGGCGGACTTCTCGTTCCCGCAGGTTGATATCAGCCTCGAC TTCGGCGGCTCTCCGGCCGTTCCGTCGTCGTCCGGTGCTGGCGCCGGCGCCGGGGCAGCG CCGTCGTCGTCGGGGAGGTGGGCGGCGCAGCTGCTGATGGAGTGCGCGCGCGCGGTGGCG GGGCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCTCAACGAGCTGGCCTCGCCG TACGGCGACGTCGACCAGAAGCTGGCCTCCTACTTCCTGCAGGGCCTCTTCGCGCGGCTC ACCACCTCCGGCCCGCGCACGCTGCGGACGCTCGCCACCGCGTCGGACCGGAACGCGTCG TTCGACTCCACGCGCCGCACGGCGCTCAAGTTCCAGGAGCTCAGCCCGTGGACGCCGTTC GGGCACGTCGCCGCCAACGGCGCCATACTCGAGTCGTTCCTGGAGGCCGCGGCGGCGGGC GCCGCCGCCTCCTCCTCCTCGTCGTCTTCATCGTCGACGCCGCCGACGCGGCTGCACATC CTCGACCTGAGCAACACGTTCTGCACGCAGTGGCCGACCCTCCTGGAGGCGCTGGCCACC CGGTCCTCGGACGACACGCCGCACCTGTCCATCACCACCGTCGTGCCCACGGCGGCGCCG TCGGCGGCCGCGCAGCGCGTGATGCGGGAGATCGGGCAGCGCCTCGAGAAGTTCGCGCGG CTGATGGGCGTCCCGTTCAGCTTCCGCGCCGTGCACCACTCGGGGGACCTGGCCGACCTC GACCTCGCCGCGCTGGACCTCCGCGAGGGCGGCGCCACCGCCGCGCTCGCCGTCAACTGC GTAAACGCGCTGCGCGGGGTCGCGCGGGGGCGCGACGCGTTCGTGGCGTCGCTCCGGCGC CTGGAGCCGCGCGTGGTCACCGTCGTGGAGGAGGAGGCCGACCTGGCGGCGCCGGAGGCG GACGCGTCGTCGGAGGCCGACACCGACGCCGCGTTCGTCAAGGTGTTCGGCGAGGGCCTC CGCTTCTTCTCGGCGTACATGGACTCGCTGGAGGAGAGCTTCCCCAAGACAAGCAACGAG AGGCTGTCACTGGAGAGGGCGGTCGGCCGTGCCATCGTCGACCTCGTGTCATGCCCGGCC TCCCAGTCCGCCGAGCGCCGGGAGACCGCCGCGTCGTGGGCGCGGCGCATGCGGTCGGCG GGGTTCTCGCCGGCGGCATTCAGCGAGGACGTCGCCGACGACGTGCGGTCGCTTCTCCGG CGGTACAAGGAGGGCTGGTCGATGCGGGACGCCGGCGGTGCCACGGACGACGCCGCCGGC GCCGCTGCTGCCGGAGCGTTCCTTGCGTGGAAGGAGCAGCCTGTCGTGTGGGCGAGCGCG TGGAAGCCATGA