Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0428700-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:17934776:17935787:1 gene:Os03g0428700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 31 description:Similar to Expansin-A31. (Os03t0428700-01)
Sequence

ATGGACATGGCCATGTCGTCGCGGCTGGCTCTGTGCCTCGCGGTGGTCGCGGCGTGCGCG
GCGGGCGGCGCGGTGGCCGACTGGTCACCGGCGACGGCGACGTTCTATGGCGGGAGCGAC
GGGTCCGGGACGATGGGCGGCGCGTGCGGGTACGGCAACCTGTACGACCAGGGGTACGGC
GTGGACAACGCGGCGCTGAGCCAGGCGCTGTTCAACGACGGCGCGTCGTGCGGGCAGTGC
TACCTGATCGTCTGCGACACGAGCAGGGCGCCGCAGTGGTGCAAGGCCGGCACGGCGGTG
ACCGTGACGGCGACCAACCTGTGCCCGCCCAACTGGGCGCTCCCGAGCGACGGCGGCGGG
TGGTGCAACCCGCCGCGGCCGCACTTCGACATGTCGCAGCCGGCGTGGGAGCAGATCGGC
GTGTACCAGGCCGGGATCGTGCCGGTGCTGTACCAGCGGGTGAGGTGCTGGCGCCAGGGC
GGGGTGCGGTTCACCGTCGCCGGCCTCAACTACTTCGAGCTCGTGCTCATCACCAACGTC
GCCGGCAGCGGATCGGTGGCCAGCGCGTGGATCAAGGGGACCAACACCGGGTGGATCCAG
ATGTCGCGGAACTGGGGCGCCAACTGGCAGTCGCTCGCCGGGCTCGCCGGCCAGGCGCTC
AGCTTCGCCGTCACCACCACCGGCGGCCAGTACCTGCAGTTCCAGGACGTGGCGCCGGCG
TGGTGGCAGTTCGGCCAGACCTTCTCCACCTACCAGCAGTTCGACTACTAG

Peptide Sequence

PEP ID

Os03t0428700-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:17934776:17935787:1 gene:Os03g0428700 transcript:Os03t0428700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 31 description:Similar to Expansin-A31. (Os03t0428700-01)
Sequence

MDMAMSSRLALCLAVVAACAAGGAVADWSPATATFYGGSDGSGTMGGACGYGNLYDQGYG
VDNAALSQALFNDGASCGQCYLIVCDTSRAPQWCKAGTAVTVTATNLCPPNWALPSDGGG
WCNPPRPHFDMSQPAWEQIGVYQAGIVPVLYQRVRCWRQGGVRFTVAGLNYFELVLITNV
AGSGSVASAWIKGTNTGWIQMSRNWGANWQSLAGLAGQALSFAVTTTGGQYLQFQDVAPA
WWQFGQTFSTYQQFDY

Transcript Sequence

Transcript ID

Os03t0428700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:17934776:17935787:1 gene:Os03g0428700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:ALPHA-EXPANSIN 31 description:Similar to Expansin-A31. (Os03t0428700-01)
Sequence

ATCACTCGCAACACCAAAGCAGAGTTAGCTAGTACTACTACACTTGCAACGCTCCATCAA
AAGTTTTGCATGGACATGGCCATGTCGTCGCGGCTGGCTCTGTGCCTCGCGGTGGTCGCG
GCGTGCGCGGCGGGCGGCGCGGTGGCCGACTGGTCACCGGCGACGGCGACGTTCTATGGC
GGGAGCGACGGGTCCGGGACGATGGGCGGCGCGTGCGGGTACGGCAACCTGTACGACCAG
GGGTACGGCGTGGACAACGCGGCGCTGAGCCAGGCGCTGTTCAACGACGGCGCGTCGTGC
GGGCAGTGCTACCTGATCGTCTGCGACACGAGCAGGGCGCCGCAGTGGTGCAAGGCCGGC
ACGGCGGTGACCGTGACGGCGACCAACCTGTGCCCGCCCAACTGGGCGCTCCCGAGCGAC
GGCGGCGGGTGGTGCAACCCGCCGCGGCCGCACTTCGACATGTCGCAGCCGGCGTGGGAG
CAGATCGGCGTGTACCAGGCCGGGATCGTGCCGGTGCTGTACCAGCGGGTGAGGTGCTGG
CGCCAGGGCGGGGTGCGGTTCACCGTCGCCGGCCTCAACTACTTCGAGCTCGTGCTCATC
ACCAACGTCGCCGGCAGCGGATCGGTGGCCAGCGCGTGGATCAAGGGGACCAACACCGGG
TGGATCCAGATGTCGCGGAACTGGGGCGCCAACTGGCAGTCGCTCGCCGGGCTCGCCGGC
CAGGCGCTCAGCTTCGCCGTCACCACCACCGGCGGCCAGTACCTGCAGTTCCAGGACGTG
GCGCCGGCGTGGTGGCAGTTCGGCCAGACCTTCTCCACCTACCAGCAGTTCGACTACTAG
ATGATGAGTAAAATGGTTCGTCATTTTAACGGAGCTTAGCTAGCAATAGCAAAGCTGTAC
TTCCTTCCACCGCTTATTCCTTTATTCCTGTGCTGCTCGATCGTCACACGATCGATGCTG
ATAATCTGTTTCCTAAATTTTTCCTTGATTCTATTGCCAATATTAATTATGT