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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0427100-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:17850708:17853697:-1 gene:Os03g0427100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0427100-01)
Sequence

ATGTGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTTTAGGGAAGAAGAACACTCCCAAC
TGCACCCCGTCCAATGGTGATTGCTCTGATGATGAGGCATCTTCGTGTACAAGCAGGGAA
GAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCAACATAGTGGAGAATGTGCCATAT
GTACTATGGTGTGGCCACACCATGTGCAAGAACTGCATCCTAGGACTTCAATGGGCTATC
ATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCTTTGTCTCCTGTCCCTGGTGCAAT
CTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCGCATTTCCACGCAAAAACTACTTC
CTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAGCCAGATCGCGCTCTGCTATTCAT
AGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTAGGGCAAGTGGAAATGAAGGTTAT
TCGAATCCCATCAGACGTCCACTCCCACCACCGGTTGAAACACAATCCCCCAGTGTGAAC
CATGCCAATCATGGGGTCCCCATCTTGAATGCAGAGAGGGTACAGGCGTTGTTGCGCAAG
TCGCTGTCCTTCTTGGTTCACCTGACTGCCAAGTTTCCCCTGGTGTTCATTTTCCTCCTC
ATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCTTGTTATTATACATCCTTATCACC
GTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATTTTGCTTACCCTAGCCTAGACTGG
CTTGTTAGAGAAATCTTTGCTTGA

Peptide Sequence

PEP ID

Os03t0427100-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:17850708:17853697:-1 gene:Os03g0427100 transcript:Os03t0427100-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0427100-01)
Sequence

MWNFASSAWGSGLGKKNTPNCTPSNGDCSDDEASSCTSREEGLECPICWESFNIVENVPY
VLWCGHTMCKNCILGLQWAIIKVPTVPIQLPFFVSCPWCNLLSLRIIYKGNLAFPRKNYF
LLWMVEGMNGERARSRSAIHSEQQTTWLSSSSRASGNEGYSNPIRRPLPPPVETQSPSVN
HANHGVPILNAERVQALLRKSLSFLVHLTAKFPLVFIFLLIVLYAIPASAAVLLLYILIT
VLFALPSFLILYFAYPSLDWLVREIFA

Transcript Sequence

Transcript ID

Os03t0427100-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:17850708:17853697:-1 gene:Os03g0427100 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0427100-01)
Sequence

GCTCCCCCACACCCCGCGCGCGTTCTCCCCTCGCCCGCCGCCTGCGCGCCTATCTCCGCC
GCGCGAGAGGTGGCGCGGTGCCCAGCGCGCGTCCTGCTGCTTCCACCGCGTCCTCGCCTG
CCTGCCTGCCGTGCAAATGGGATGTAAGCGAGAATTCAAACTGGACATATTTGGCCCTTT
TGAAACTTGAGGAACCAGCTTGTTTGGCAACTCGAGGGAAGGAGATTGGGAGTTTACACG
AGAGTATTAATGATCCCACAAGTAGAATTTTGATGTTGGCAAAATCAGGGTCTTTGAGAT
AGCTTACCCTTTTGGGCTAGAGAATGTGGAATTTCGCGTCCAGTGCTTGGGGATCTGGTT
TAGGGAAGAAGAACACTCCCAACTGCACCCCGTCCAATGGTGATTGCTCTGATGATGAGG
CATCTTCGTGTACAAGCAGGGAAGAAGGCCTTGAATGCCCCATATGTTGGGAGTCCTTCA
ACATAGTGGAGAATGTGCCATATGTACTATGGTGTGGCCACACCATGTGCAAGAACTGCA
TCCTAGGACTTCAATGGGCTATCATCAAGGTTCCGACGGTGCCAATCCAGCTACCATTCT
TTGTCTCCTGTCCCTGGTGCAATCTCCTGTCGCTCCGCATTATTTACAAAGGGAATCTCG
CATTTCCACGCAAAAACTACTTCCTCCTTTGGATGGTTGAGGGGATGAATGGTGAGCGAG
CCAGATCGCGCTCTGCTATTCATAGTGAGCAACAAACTACATGGCTCTCAAGTAGCAGTA
GGGCAAGTGGAAATGAAGGTTATTCGAATCCCATCAGACGTCCACTCCCACCACCGGTTG
AAACACAATCCCCCAGTGTGAACCATGCCAATCATGGGGTCCCCATCTTGAATGCAGAGA
GGGTACAGGCGTTGTTGCGCAAGTCGCTGTCCTTCTTGGTTCACCTGACTGCCAAGTTTC
CCCTGGTGTTCATTTTCCTCCTCATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCT
TGTTATTATACATCCTTATCACCGTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATT
TTGCTTACCCTAGCCTAGACTGGCTTGTTAGAGAAATCTTTGCTTGAGATTTCCTTTACA
AAACACTGCTGGCGAAATCTCCACGCTGTTGTTGGATCTGTGTATCTGAACTGAATTCTT
TCTGCTCTTTCATGTCCTTGTACGTGTAAATGTTCCAAGGACATGCGTGCCCTTGTTAGC
TTTTTTTTCTTTTTCTTTTGGTGTTACAGTTGTATATTTGGAAACAGTAGAAAGCCAATG
TCTGTCCTCTGTAGACATGATCACTCATCTCCTAGTACAGCCTGATCTGGAACAAACC