Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0426900-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:17832202:17839049:1 gene:Os03g0426900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS I CLP ATPASE B-C description:Similar to Heat shock protein 101. (Os03t0426900-01);Similar to APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6); ATP binding / ATPase. (Os03t0426900-02)
Sequence	ATGGCCGCAGCGCCGCCGCTCGCCGCGGGGCTCCGGCCCGCCATGGCGGCGGCACAGGCG CCGGTCGTCGCCGCGGCGTGGGGCGTGGGCGCTAGGAGGGGGGCGGCCTTGTCGTCGTCG GCTCGGTGTAGGGCGCTTCGGTTGTCGAGAGGAGGAGGAGGAGGGCGAGATGGGTGGGTG CCTCCTCCCGTGGTGGGGAGGATGCCGCCGCGGACGCTCTCCGTCAGGTGCGCCGCCAGC AATGGGAGGATTACACAACAAGAGTTCACTGAGATGGCATGGCAATCGATTGTTTCGTCG CCTGAAGTAGCGAAAGAGAGTAAACACCAGATTGTGGAGACTGAACATCTGATGAAATCA TTGCTGGAGCAAAGGAATGGGCTCGCCCGTCGAATCTTTTCTAAAGCTGGAGTTGATAAT ACAAGGCTTCTTGATGCCACAGAGAAGTTCATCCAGCGGCAGCCTAAGGTGTTGGGTGAA GATCCTGGTTCCATGTTGGGACGTGACTTGGAAGCTCTGATACAAAGAGCACGAGACTTT AAAAAAGAGTATGGTGATTCATTTGTTTCGGTTGAGCATCTGGTCCTTGGTTTTGCGGAG GATAAACGATTTGGAAGACAGCTGTTCAAGGATTTCCAGATTACCGTACAGTCCTTGAAA ACTGCCATTGAATCAATAAGAGGGAAACAAAATGTGATTGATCAAGATCCTGAGGGAAAA TATGAAGCTTTGGACAAGTATGGCAAGGACCTCACAGCCATGGCACGTCAGGGGAAACTT GACCCGGTTATAGGAAGAGATGATGAAATTCGTAGATGCATTCAAATTTTATCTCGGAGA ACAAAGAATAATCCAGTTTTGATTGGTGAACCTGGTGTGGGGAAAACTGCTATAGCTGAA GGGCTTGCTCAGAGGATAGTGCAAGGAGATGTTCCGCAAGCTCTAACAAACCGCAGACTA ATTGCACTTGACATGGGTGCTTTGATTGCTGGGGCAAAATATCGTGGGGAATTTGAGGAT AGGCTGAAGGCTGTACTCAAGGAAGTCACAGATTCTGATGGACAAACCATTCTTTTCATT GATGAGATTCACACTGTTGTTGGAGCAGGTGCAACAAATGGTGCCATGGACGCTGGTAAT CTTCTAAAACCGATGCTTGGTAGGGGAGAGCTACGTTGTATCGGTGCCACAACCCTTGAC GAGTACCGCAAATATATTGAGAAGGATCCTGCATTGGAGCGTCGCTTCCAACAAGTTTAT GTTGATCAACCTTCAGTTGAAGATACAATCTCAATACTCCGTGGATTACGGGAGAGATAT GAATTGCACCATGGGGTACGCATATCAGACAGTGCACTTGTGGCAGCAGCTCTTCTCTCA GACCGTTACATTAGTGGACGATTTCTGCCGGACAAAGCAATTGATTTGGTTGATGAGTCA GCTGCCAAATTGAAAATGGAGATAACTTCCAAGCCAACTGCTCTAGATGAGATTGATCGT GCTGTAATAAAGCTTGAAATGGAACGTCTCTCACTAACAAACGATACAGACAAAGCATCA AGGGACAGACTATCTCGAATTGAAGCAGAACTGTCACTATTGAAAGAAAAGCAGAAGGAC CTGACTGAGCAGTGGGAGCGTGAGAAGTCGGTGATGACTAAGATTCAATCTATTAAAGAA GAGATTGATAGGGTCAATGTGGAGATCCAGCAGGCCGAACGTGAGTATGATCTCAATCGT GCTGCTGAACTGAAGTATGGCAGTCTGAACGCATTGCAGCGCCAGCTTCAAACAACAGAG AAAGAGCTAGATGAATATCAAAGTTCTGGGAAATCCATGCTAAGAGAAGAGGTCACCCAA GATGATATTGCAGAAATAGTGAGCAGGTGGACTGGTATTCCAGTATCTAAACTAAAGCAA TCTGATAGGGAGAAGTTGCTGTATCTAGAGGAAGAACTGCACAAGCGTGTTGTTGGGCAG GATCCTGCAGTCAAAGCAGTTTCTGAGGCTATTCAGAGATCCAGGGCTGGTTTGTCCGAT CCAAATCGCCCCATTGCCAGTTTCATGTTCATGGGCCCTACAGGAGTTGGCAAAACGGAA CTAGCAAAAGCCCTTGCTGCTTTTATGTTCAACACTGAGGAAGCTGTTGTTAGGATTGAC ATGAGTGAATACATGGAGAAGCATTCTGTCTCAAGACTGATTGGTGCACCACCAGGCTAT GTTGGGTATGAAGAGGGTGGTCAGCTTACGGAAGCTGTTCGTCGGAGGCCATATTCCATT ATCTTGTTTGATGAGATTGAGAAAGCCCATGGAGATGTATTCAATGTTTTCCTTCAAATA TTGGACGATGGAAGGGTTACTGACTCGCAGGGCAGGAAAGTGAGCTTCACCAACAGTATC ATTATCATGACATCCAATGTTGGTTCACAGTTCATACTAAACATGGATGAAGAAGGTGGG TCAACTGATTCAGCCTATGAGAATATAAAGAAGAGGGTGATGGATGCTGCAAGATCTGTT TTCCGTCCGGAGTTCATGAATCGGATTGATGAGTACATTGTCTTCAAGCCACTTGAGAGG GAACAGATCAACAGCATTGTCAAATTACAGCTTGCAAGAGTACAAAAAAGAATTGCCGAT CGCAAGATCAAACTCGAAGTGTCGCCTGGAGCAGTCGAATTCCTGGGAAGCCTTGGTTAC GATCCGAATTACGGTGCCAGGCCAGTGAAGCGAGTGATTCAACAGTATGTGGAGAACGAG CTGGCGAAGGGTATCCTGAGAGGTGATTTCAAGGACGAGGACAGCATCCTGGTAGACACC CAGGTCACCGTGCCATCTAATGGTCAGCTCCCTCAGCAAAAGCTCGTTTTCCACAAAATG AGTGAAGAATCCGCACCAGCTGCTGCTGAAGACGAGAAATTTTTGCCGGCTGTTTGA

Peptide Sequence

PEP ID	Os03t0426900-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:17832202:17839049:1 gene:Os03g0426900 transcript:Os03t0426900-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS I CLP ATPASE B-C description:Similar to Heat shock protein 101. (Os03t0426900-01);Similar to APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6); ATP binding / ATPase. (Os03t0426900-02)
Sequence	MAAAPPLAAGLRPAMAAAQAPVVAAAWGVGARRGAALSSSARCRALRLSRGGGGGRDGWV PPPVVGRMPPRTLSVRCAASNGRITQQEFTEMAWQSIVSSPEVAKESKHQIVETEHLMKS LLEQRNGLARRIFSKAGVDNTRLLDATEKFIQRQPKVLGEDPGSMLGRDLEALIQRARDF KKEYGDSFVSVEHLVLGFAEDKRFGRQLFKDFQITVQSLKTAIESIRGKQNVIDQDPEGK YEALDKYGKDLTAMARQGKLDPVIGRDDEIRRCIQILSRRTKNNPVLIGEPGVGKTAIAE GLAQRIVQGDVPQALTNRRLIALDMGALIAGAKYRGEFEDRLKAVLKEVTDSDGQTILFI DEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVY VDQPSVEDTISILRGLRERYELHHGVRISDSALVAAALLSDRYISGRFLPDKAIDLVDES AAKLKMEITSKPTALDEIDRAVIKLEMERLSLTNDTDKASRDRLSRIEAELSLLKEKQKD LTEQWEREKSVMTKIQSIKEEIDRVNVEIQQAEREYDLNRAAELKYGSLNALQRQLQTTE KELDEYQSSGKSMLREEVTQDDIAEIVSRWTGIPVSKLKQSDREKLLYLEEELHKRVVGQ DPAVKAVSEAIQRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAAFMFNTEEAVVRID MSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSIILFDEIEKAHGDVFNVFLQI LDDGRVTDSQGRKVSFTNSIIIMTSNVGSQFILNMDEEGGSTDSAYENIKKRVMDAARSV FRPEFMNRIDEYIVFKPLEREQINSIVKLQLARVQKRIADRKIKLEVSPGAVEFLGSLGY DPNYGARPVKRVIQQYVENELAKGILRGDFKDEDSILVDTQVTVPSNGQLPQQKLVFHKM SEESAPAAAEDEKFLPAV

Transcript Sequence

Transcript ID	Os03t0426900-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:17832202:17839049:1 gene:Os03g0426900 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:CLASS I CLP ATPASE B-C description:Similar to Heat shock protein 101. (Os03t0426900-01);Similar to APG6/CLPB-P/CLPB3 (ALBINO AND PALE GREEN 6); ATP binding / ATPase. (Os03t0426900-02)
Sequence	GCATCCATCCACGCCCTCCTCGTTCCCCCCTGAACCTCCCAGAAGCTCCCTCTCCTCCCC GCCGCCGCGACGCCCACCGCCACCTATTTATACCCGCACCCCGCCTCGCCACCTCACCGT TCTATCCTCGCGCTCGCCTCCGCTCCAATCCCAATCTCCGATCTCCCGCCGCCGCCGCTG AAGAACTGAACAATCTACTTCTAGTATCTCAAGAGAATTCTGAGATCAAGCCTGCCATGG CCGCAGCGCCGCCGCTCGCCGCGGGGCTCCGGCCCGCCATGGCGGCGGCACAGGCGCCGG TCGTCGCCGCGGCGTGGGGCGTGGGCGCTAGGAGGGGGGCGGCCTTGTCGTCGTCGGCTC GGTGTAGGGCGCTTCGGTTGTCGAGAGGAGGAGGAGGAGGGCGAGATGGGTGGGTGCCTC CTCCCGTGGTGGGGAGGATGCCGCCGCGGACGCTCTCCGTCAGGTGCGCCGCCAGCAATG GGAGGATTACACAACAAGAGTTCACTGAGATGGCATGGCAATCGATTGTTTCGTCGCCTG AAGTAGCGAAAGAGAGTAAACACCAGATTGTGGAGACTGAACATCTGATGAAATCATTGC TGGAGCAAAGGAATGGGCTCGCCCGTCGAATCTTTTCTAAAGCTGGAGTTGATAATACAA GGCTTCTTGATGCCACAGAGAAGTTCATCCAGCGGCAGCCTAAGGTGTTGGGTGAAGATC CTGGTTCCATGTTGGGACGTGACTTGGAAGCTCTGATACAAAGAGCACGAGACTTTAAAA AAGAGTATGGTGATTCATTTGTTTCGGTTGAGCATCTGGTCCTTGGTTTTGCGGAGGATA AACGATTTGGAAGACAGCTGTTCAAGGATTTCCAGATTACCGTACAGTCCTTGAAAACTG CCATTGAATCAATAAGAGGGAAACAAAATGTGATTGATCAAGATCCTGAGGGAAAATATG AAGCTTTGGACAAGTATGGCAAGGACCTCACAGCCATGGCACGTCAGGGGAAACTTGACC CGGTTATAGGAAGAGATGATGAAATTCGTAGATGCATTCAAATTTTATCTCGGAGAACAA AGAATAATCCAGTTTTGATTGGTGAACCTGGTGTGGGGAAAACTGCTATAGCTGAAGGGC TTGCTCAGAGGATAGTGCAAGGAGATGTTCCGCAAGCTCTAACAAACCGCAGACTAATTG CACTTGACATGGGTGCTTTGATTGCTGGGGCAAAATATCGTGGGGAATTTGAGGATAGGC TGAAGGCTGTACTCAAGGAAGTCACAGATTCTGATGGACAAACCATTCTTTTCATTGATG AGATTCACACTGTTGTTGGAGCAGGTGCAACAAATGGTGCCATGGACGCTGGTAATCTTC TAAAACCGATGCTTGGTAGGGGAGAGCTACGTTGTATCGGTGCCACAACCCTTGACGAGT ACCGCAAATATATTGAGAAGGATCCTGCATTGGAGCGTCGCTTCCAACAAGTTTATGTTG ATCAACCTTCAGTTGAAGATACAATCTCAATACTCCGTGGATTACGGGAGAGATATGAAT TGCACCATGGGGTACGCATATCAGACAGTGCACTTGTGGCAGCAGCTCTTCTCTCAGACC GTTACATTAGTGGACGATTTCTGCCGGACAAAGCAATTGATTTGGTTGATGAGTCAGCTG CCAAATTGAAAATGGAGATAACTTCCAAGCCAACTGCTCTAGATGAGATTGATCGTGCTG TAATAAAGCTTGAAATGGAACGTCTCTCACTAACAAACGATACAGACAAAGCATCAAGGG ACAGACTATCTCGAATTGAAGCAGAACTGTCACTATTGAAAGAAAAGCAGAAGGACCTGA CTGAGCAGTGGGAGCGTGAGAAGTCGGTGATGACTAAGATTCAATCTATTAAAGAAGAGA TTGATAGGGTCAATGTGGAGATCCAGCAGGCCGAACGTGAGTATGATCTCAATCGTGCTG CTGAACTGAAGTATGGCAGTCTGAACGCATTGCAGCGCCAGCTTCAAACAACAGAGAAAG AGCTAGATGAATATCAAAGTTCTGGGAAATCCATGCTAAGAGAAGAGGTCACCCAAGATG ATATTGCAGAAATAGTGAGCAGGTGGACTGGTATTCCAGTATCTAAACTAAAGCAATCTG ATAGGGAGAAGTTGCTGTATCTAGAGGAAGAACTGCACAAGCGTGTTGTTGGGCAGGATC CTGCAGTCAAAGCAGTTTCTGAGGCTATTCAGAGATCCAGGGCTGGTTTGTCCGATCCAA ATCGCCCCATTGCCAGTTTCATGTTCATGGGCCCTACAGGAGTTGGCAAAACGGAACTAG CAAAAGCCCTTGCTGCTTTTATGTTCAACACTGAGGAAGCTGTTGTTAGGATTGACATGA GTGAATACATGGAGAAGCATTCTGTCTCAAGACTGATTGGTGCACCACCAGGCTATGTTG GGTATGAAGAGGGTGGTCAGCTTACGGAAGCTGTTCGTCGGAGGCCATATTCCATTATCT TGTTTGATGAGATTGAGAAAGCCCATGGAGATGTATTCAATGTTTTCCTTCAAATATTGG ACGATGGAAGGGTTACTGACTCGCAGGGCAGGAAAGTGAGCTTCACCAACAGTATCATTA TCATGACATCCAATGTTGGTTCACAGTTCATACTAAACATGGATGAAGAAGGTGGGTCAA CTGATTCAGCCTATGAGAATATAAAGAAGAGGGTGATGGATGCTGCAAGATCTGTTTTCC GTCCGGAGTTCATGAATCGGATTGATGAGTACATTGTCTTCAAGCCACTTGAGAGGGAAC AGATCAACAGCATTGTCAAATTACAGCTTGCAAGAGTACAAAAAAGAATTGCCGATCGCA AGATCAAACTCGAAGTGTCGCCTGGAGCAGTCGAATTCCTGGGAAGCCTTGGTTACGATC CGAATTACGGTGCCAGGCCAGTGAAGCGAGTGATTCAACAGTATGTGGAGAACGAGCTGG CGAAGGGTATCCTGAGAGGTGATTTCAAGGACGAGGACAGCATCCTGGTAGACACCCAGG TCACCGTGCCATCTAATGGTCAGCTCCCTCAGCAAAAGCTCGTTTTCCACAAAATGAGTG AAGAATCCGCACCAGCTGCTGCTGAAGACGAGAAATTTTTGCCGGCTGTTTGATGGGCCG AACTTTTAGCAGATGAGGAATAAAATGTAGATAGAAGATTAGCAAACTTGAGTGGATAGC ATAGTATACAGACACAATTTCCCTTGCTAGTTCAACATTACATAAGCACAAAGTCTGTGC TG