Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0421000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:17515060:17521880:-1 gene:Os03g0421000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os03t0421000-01)
Sequence

ATGGTCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCAATGAAATGGTTTGTGGGATA
TGTGGCAGCGGTCATGACCAAGATAGAATGGCAAAATGTATTCGGTGCAATGTCTATCAA
CATTGTTATTGCTTCCCAGTGGTGACATATGATGTTCCTGATGAATGGTGTTGTTGTGAG
TGCCAAAACAAGTCCAATTGGGACCAAACTCCTAGTCAAGGTGGGCAAACTATCAGGAAT
AGAGTCCATCAAGATAGCCTGAAAATTCCAAACAAGTTTGAAAATGCCAAAGTGAAATAC
ATTTCTTATGAAGAGGTGTCATTATTGAATAATAATGAGAGACCACCAAATTGTAGGTCA
AATTTTCATGTGCGACGTACAAATAGTCATGTCCGTCCTGCATCTCCTCCAAATGCGAAA
CAGTCATCTAGTAGGAGTGACAATCGTGCTTATAGCCAGTTCCATCGGAAATTTCCAAAT
GGGCAGCAGTCCCCCTGTAGGAGTGACACTCAAGGGCCTTTTCTGAAACGAGGTGATGGT
GCAAGTCAGAACCAGACAGAGATTGCTGGTATAAACATGAAACAGAAAGCACAATCAGGT
GAGATGCTTCGTCCATGTCATAGAAGCAGAGCAATTAGAGGAAAAATTGACTTTCAGGTT
CAAAATGAGCAGAGGGAAAAGAAGGTAGTTAGTGCAGATAAAGTAACAATGAACCCCCAG
AGTCGGGATGATCCTAGAGAAAAGAGTGGATCCAATGTTACAGGTACTGATATTGGACGT
GGATCTGAAATGAGTCCGGACAATGATATAGGCATGCTGGTGGTCATTAATTCAAGTGTG
GAATATGCAAGACAACCTCCACCAGAAATTTGTTGGACGGGATGCTTTCTTGTCTCCAAT
GGATCAAACTGTAATCCTGCTGATTTTAAAGCTTACTGCCCATCAAAAGTGTCGTCTAAA
GTTCTCAATGTCATCAAGAGCATGCCTAGTATAATAGAGTTGGATATATTGCCTCGAATG
GATGAATGGCCAAAATCTTTTGAGATAAATCCACCAGTTTATGAAGACATTGGCCTGTTC
TTCTTCTCCACTGAACTTGACCGGAATGGAAAGAGTCAATCTCATGTCATGGAGACGAGC
TGCAATTTTGTTATGAGGGCATATATCAACAATATAAAGTTGCTGATATATTCCTCAGAA
GTGCTTCCACCTGATTCCCAGTGGATTGATGGAGAGAGCTACTTATGGGGTGTCTTTGTG
GATCCCAAGAGGAGGCATAAGTCTATGCCATTTGGTTCCATTTCTGCATGA

Peptide Sequence

PEP ID

Os03t0421000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:17515060:17521880:-1 gene:Os03g0421000 transcript:Os03t0421000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os03t0421000-01)
Sequence

MVAVARPAASAASNEMVCGICGSGHDQDRMAKCIRCNVYQHCYCFPVVTYDVPDEWCCCE
CQNKSNWDQTPSQGGQTIRNRVHQDSLKIPNKFENAKVKYISYEEVSLLNNNERPPNCRS
NFHVRRTNSHVRPASPPNAKQSSSRSDNRAYSQFHRKFPNGQQSPCRSDTQGPFLKRGDG
ASQNQTEIAGINMKQKAQSGEMLRPCHRSRAIRGKIDFQVQNEQREKKVVSADKVTMNPQ
SRDDPREKSGSNVTGTDIGRGSEMSPDNDIGMLVVINSSVEYARQPPPEICWTGCFLVSN
GSNCNPADFKAYCPSKVSSKVLNVIKSMPSIIELDILPRMDEWPKSFEINPPVYEDIGLF
FFSTELDRNGKSQSHVMETSCNFVMRAYINNIKLLIYSSEVLPPDSQWIDGESYLWGVFV
DPKRRHKSMPFGSISA

Transcript Sequence

Transcript ID

Os03t0421000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:17515060:17521880:-1 gene:Os03g0421000 gene_biotype:protein_coding transcript_biotype:protein_coding description:Zinc finger, FYVE/PHD-type domain containing protein. (Os03t0421000-01)
Sequence

CGAGTAGCGAGTAGGGCTTCCTCCTTCTTGCTGCTTTCGGCTGCTGCTTCCGCGCCATCC
ATCCTAGTGACCACATCCTCCGCCACCGCCGATCCCCATCCATCGCGCGAGCATGGTCGC
CGTCGCTCGTCCTGCTGCTTCCGCCGCATCCAATGAAATGGTTTGTGGGATATGTGGCAG
CGGTCATGACCAAGATAGAATGGCAAAATGTATTCGGTGCAATGTCTATCAACATTGTTA
TTGCTTCCCAGTGGTGACATATGATGTTCCTGATGAATGGTGTTGTTGTGAGTGCCAAAA
CAAGTCCAATTGGGACCAAACTCCTAGTCAAGGTGGGCAAACTATCAGGAATAGAGTCCA
TCAAGATAGCCTGAAAATTCCAAACAAGTTTGAAAATGCCAAAGTGAAATACATTTCTTA
TGAAGAGGTGTCATTATTGAATAATAATGAGAGACCACCAAATTGTAGGTCAAATTTTCA
TGTGCGACGTACAAATAGTCATGTCCGTCCTGCATCTCCTCCAAATGCGAAACAGTCATC
TAGTAGGAGTGACAATCGTGCTTATAGCCAGTTCCATCGGAAATTTCCAAATGGGCAGCA
GTCCCCCTGTAGGAGTGACACTCAAGGGCCTTTTCTGAAACGAGGTGATGGTGCAAGTCA
GAACCAGACAGAGATTGCTGGTATAAACATGAAACAGAAAGCACAATCAGGTGAGATGCT
TCGTCCATGTCATAGAAGCAGAGCAATTAGAGGAAAAATTGACTTTCAGGTTCAAAATGA
GCAGAGGGAAAAGAAGGTAGTTAGTGCAGATAAAGTAACAATGAACCCCCAGAGTCGGGA
TGATCCTAGAGAAAAGAGTGGATCCAATGTTACAGGTACTGATATTGGACGTGGATCTGA
AATGAGTCCGGACAATGATATAGGCATGCTGGTGGTCATTAATTCAAGTGTGGAATATGC
AAGACAACCTCCACCAGAAATTTGTTGGACGGGATGCTTTCTTGTCTCCAATGGATCAAA
CTGTAATCCTGCTGATTTTAAAGCTTACTGCCCATCAAAAGTGTCGTCTAAAGTTCTCAA
TGTCATCAAGAGCATGCCTAGTATAATAGAGTTGGATATATTGCCTCGAATGGATGAATG
GCCAAAATCTTTTGAGATAAATCCACCAGTTTATGAAGACATTGGCCTGTTCTTCTTCTC
CACTGAACTTGACCGGAATGGAAAGAGTCAATCTCATGTCATGGAGACGAGCTGCAATTT
TGTTATGAGGGCATATATCAACAATATAAAGTTGCTGATATATTCCTCAGAAGTGCTTCC
ACCTGATTCCCAGTGGATTGATGGAGAGAGCTACTTATGGGGTGTCTTTGTGGATCCCAA
GAGGAGGCATAAGTCTATGCCATTTGGTTCCATTTCTGCATGACCTCTTGCTTTCCTTGG
GCATAGTGAAAGGTGTGGCTGACTCCATGGATAACTGAGAGGACGCGTTTGATCTATTTG
ATCACATGGCTGAAGGGAGGAATCTTGAATTGATGATTTGGGAGGATTCCGGCTTATAGG
ACAATAAATAATCGTTGTTTGGTTCAGAAATTGAACCACCGATCTGTAAAACTGCATGTT
AGTCTCACAGATTGTTGGAATTACAACCAACTATGCACTGTTTGTTATGTTGTAGAACAG
ATCAGCCCTAGTACTTTTATATACAAATAAAATGACATAATGGATACTGAAATTTGCAGG
TAGCAAACCCATCTAAAAAAGCATATCGCT