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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0418000-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:17390820:17391862:1 gene:Os03g0418000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASIC CHITINASE 10 description:Similar to Basic endochitinase 2 precursor (EC 3.2.1.14). (Os03t0418000-00)
Sequence

ATGAGAGCGCTCGCTGTGGTGGCCATGGTGGCCACGGCCTTCCTCGCGGCGGCCGTGCAT
GCCGAGCAGTGCGGCAGCCAGGCCGGCGGCGCGGTGTGCCCCAACTGCCTCTGCTGCAGC
CAGTTCGGCTGGTGCGGCTCCACCTCCGACTACTGCGGCGCCGGATGCCAGAGCCAGTGC
TCCGCCGCCGGCTGCGGCGGCGGCGGCCCGACCCCGCCGTCCGGCAGCGGTGGCAGCGGC
GTCGCGTCCATCGTGTCGCGCTCGCTCTTCGACCAGATGCTGCTCCACCGCAACGATGCG
GCGTGCCCGGCCAGCAACTTCTACACCTACGACGCCTTCGTCGCCGCCGCCAGCGCCTTC
CCGGGCTTCGCCGCCGCGGGCGGCGACGCCGACACCAACAAGCGCGAGGTCGCCGCGTTC
CTTGCGCAGACGTCCCACGAGACCACCGGCGGGTGGGCGACGGCGCCCGACGGCCCCTAC
GCGTGGGGCTACTGCTTCAAGGAGGAGAACGGCGGCGCCGCCGGGCCGGACTACTGCCAG
CAGAGCGCGCAGTGGCCGTGCGCCGCCGGCAAGAAGTACTACGGCCGGGGTCCCATCCAG
CTCTCCTACAACTTCAACTACGGGCCGGCGGGGCAGGCCATCGGCGCCGACCTGCTCGGC
GACCCGGACCTCGTGGCGTCCGACGCCACCGTCTCCTTCGACACGGCCTTCTGGTTCTGG
ATGACGCCGCAGTCGCCCAAGCCGTCGTGCCACGCGGTCGCCACCGGCCAGTGGACGCCC
TCCGCCGACGACCAGGCGGCGGGCCGCGTGCCGGGCTACGGCGTCATCACCAACATCATC
AACGGCGGGCTGGAGTGCGGCCATGGCGAGGACGATCGCGTCGCCGACCGGATCGGCTTC
TACAAGCGCTACTGCGACATCCTCGGCGTCAGCTACGACGCCAACTTGGATTGCTACAGC
CAGAGGCCCTTCGGCTCCTAA

Peptide Sequence

PEP ID

Os03t0418000-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:17390820:17391862:1 gene:Os03g0418000 transcript:Os03t0418000-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASIC CHITINASE 10 description:Similar to Basic endochitinase 2 precursor (EC 3.2.1.14). (Os03t0418000-00)
Sequence

MRALAVVAMVATAFLAAAVHAEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQC
SAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAF
PGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQ
QSAQWPCAAGKKYYGRGPIQLSYNFNYGPAGQAIGADLLGDPDLVASDATVSFDTAFWFW
MTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGF
YKRYCDILGVSYDANLDCYSQRPFGS

Transcript Sequence

Transcript ID

Os03t0418000-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:17390820:17391862:1 gene:Os03g0418000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:BASIC CHITINASE 10 description:Similar to Basic endochitinase 2 precursor (EC 3.2.1.14). (Os03t0418000-00)
Sequence

CAGCAACTCAGCGATCTTATATTTACCCAACACACCATGAGAGCGCTCGCTGTGGTGGCC
ATGGTGGCCACGGCCTTCCTCGCGGCGGCCGTGCATGCCGAGCAGTGCGGCAGCCAGGCC
GGCGGCGCGGTGTGCCCCAACTGCCTCTGCTGCAGCCAGTTCGGCTGGTGCGGCTCCACC
TCCGACTACTGCGGCGCCGGATGCCAGAGCCAGTGCTCCGCCGCCGGCTGCGGCGGCGGC
GGCCCGACCCCGCCGTCCGGCAGCGGTGGCAGCGGCGTCGCGTCCATCGTGTCGCGCTCG
CTCTTCGACCAGATGCTGCTCCACCGCAACGATGCGGCGTGCCCGGCCAGCAACTTCTAC
ACCTACGACGCCTTCGTCGCCGCCGCCAGCGCCTTCCCGGGCTTCGCCGCCGCGGGCGGC
GACGCCGACACCAACAAGCGCGAGGTCGCCGCGTTCCTTGCGCAGACGTCCCACGAGACC
ACCGGCGGGTGGGCGACGGCGCCCGACGGCCCCTACGCGTGGGGCTACTGCTTCAAGGAG
GAGAACGGCGGCGCCGCCGGGCCGGACTACTGCCAGCAGAGCGCGCAGTGGCCGTGCGCC
GCCGGCAAGAAGTACTACGGCCGGGGTCCCATCCAGCTCTCCTACAACTTCAACTACGGG
CCGGCGGGGCAGGCCATCGGCGCCGACCTGCTCGGCGACCCGGACCTCGTGGCGTCCGAC
GCCACCGTCTCCTTCGACACGGCCTTCTGGTTCTGGATGACGCCGCAGTCGCCCAAGCCG
TCGTGCCACGCGGTCGCCACCGGCCAGTGGACGCCCTCCGCCGACGACCAGGCGGCGGGC
CGCGTGCCGGGCTACGGCGTCATCACCAACATCATCAACGGCGGGCTGGAGTGCGGCCAT
GGCGAGGACGATCGCGTCGCCGACCGGATCGGCTTCTACAAGCGCTACTGCGACATCCTC
GGCGTCAGCTACGACGCCAACTTGGATTGCTACAGCCAGAGGCCCTTCGGCTCCTAAGCT
TCGCCTACCTAGCTTCCACACAG