Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0417700-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:17340417:17342284:-1 gene:Os03g0417700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAIN LENGTH 3.2 description:Similar to Phytochrome P450. (Os03t0417700-01)
Sequence

ATGGATGCCACTCTCGGCGCCTCCACTACCCATGGCTACCTCCTCCTCCTCCCGGCCAAC
TCCACCACCTTCTTCTCCCCGCTCCTCGCTGCCCTCCTCGCCGTCACCTCGCTGCTCTGG
CTCGTCCCGGGCGGCCCCGCGTGGGCGCTCTCCCGCTGCCGCCGGCCCCCGCCCGGCGCG
CCGGGCGCGCTCGCCGCGCTCGCCGGCCCCGCCGCGCACCGCGCGCTCGCGGCCATGTCG
AGGTCCGTGCCTGGCGGCGCCGCCCTGGCGTCCTTCTCCGTCGGCCTCACGCGTTTCGTC
GTGGCCAGCCGCCCCGACACGGCGCGGGAGCTCCTGTCCAGCGCCGCGTTCGCCGACCGC
CCCGTGAAGGACGCGGCGCGGGGTTTGCTCTTCCACCGCGCCATGGGGTTCGCGCCCTCC
GGCGACTACTGGCGCGCGCTCCGCCGCGTCAGCGCCAACCACCTCTTCACCCCTCGCCGC
GTCGCCGCCTCGGCCCCGCGACGCCTCGCCATCGGCGAGCGCATGCTAGACCGCCTGTCC
GCCCTCGCCGGCGGCGAGATCGGCATGAGGCGCGTGCTCCACGCGGCGTCCCTGGACCAC
GTCATGGACACCGTCTTCGGGACGCGCTACGACGGCGACAGCCAGGAGGGCGCCGAGCTC
GAGGCCATGGTGAAGGAAGGGTACGACCTCCTCGGGATGTTCAACTGGGGAGACCACCTG
CCGCTGCTCAAATGGCTCGACCTGCAAGGCGTGAGGAGGAGGTGCAGGACGCTGGTGCAA
CGAGTCGACGTGTTCGTCCGAAGCATCATCGACGAGCACAGGCAGAGGAAGCGCCGCACC
GGCGGCAATGGCGGAGGCGAGGAGCTCCCCGGCGACTTCGTCGACGTGTTGCTCGGGTTG
CAGGGGGAGGAGAAGATGACGGAGTCCGACATGGTCGCCGTTCTCTGGGAGATGATCTTT
CGGGGGACGGACACGGTGGCGATTCTGCTGGAATGGATCATGGCGAGGATGGTGCTGCAC
CCGGACATCCAGGCGAAGGCGCAGGCGGAGCTCGACGCCGTCGTCGGCCGCGGGCGCGCC
GTGTCGGACGGCGACGTCGCCGGCCTGCGCTACCTCCAGTGCGTCGTGAAGGAGGCGCTC
CGCGTGCACCCGCCGGGCCCGCTCCTGTCGTGGGCGCGCCTCGCCGTGCGCGACGCGCAC
GTCGGCGGCCACGTGGTCCCCGCGGGCACCACGGCCATGGTCAACATGTGGGCCATCGCG
CACGACCCGGAGCTCTGGCCGGAGCCCGACGAGTTCCGGCCGGAGCGGTTCGCGGAGGAG
GACGTCAGCGTGCTCGGCGGCGACCTCCGCCTCGCGCCGTTCGGCGCGGGGCGGCGCGCC
TGCCCGGGCAAGACGCTCGCGCTCGCCACCGTCCACCTCTGGCTCGCGCAGCTGCTGCAC
CGCTTCGAGTGGGCACCGGTCGGCGGCGGCGTCCACTTGTTGGAGCGCCTGAACATGTCG
CTGGAGATGGAGAAGCCTCTCGTGTGCAAGGCTAAACCTAGGTGGTGA

Peptide Sequence

PEP ID

Os03t0417700-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:17340417:17342284:-1 gene:Os03g0417700 transcript:Os03t0417700-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAIN LENGTH 3.2 description:Similar to Phytochrome P450. (Os03t0417700-01)
Sequence

MDATLGASTTHGYLLLLPANSTTFFSPLLAALLAVTSLLWLVPGGPAWALSRCRRPPPGA
PGALAALAGPAAHRALAAMSRSVPGGAALASFSVGLTRFVVASRPDTARELLSSAAFADR
PVKDAARGLLFHRAMGFAPSGDYWRALRRVSANHLFTPRRVAASAPRRLAIGERMLDRLS
ALAGGEIGMRRVLHAASLDHVMDTVFGTRYDGDSQEGAELEAMVKEGYDLLGMFNWGDHL
PLLKWLDLQGVRRRCRTLVQRVDVFVRSIIDEHRQRKRRTGGNGGGEELPGDFVDVLLGL
QGEEKMTESDMVAVLWEMIFRGTDTVAILLEWIMARMVLHPDIQAKAQAELDAVVGRGRA
VSDGDVAGLRYLQCVVKEALRVHPPGPLLSWARLAVRDAHVGGHVVPAGTTAMVNMWAIA
HDPELWPEPDEFRPERFAEEDVSVLGGDLRLAPFGAGRRACPGKTLALATVHLWLAQLLH
RFEWAPVGGGVHLLERLNMSLEMEKPLVCKAKPRW

Transcript Sequence

Transcript ID

Os03t0417700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:17340417:17342284:-1 gene:Os03g0417700 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:GRAIN LENGTH 3.2 description:Similar to Phytochrome P450. (Os03t0417700-01)
Sequence

GCACCCTCCTGCCTCCCCCCAACATTCTCACACGCCATGGATGCCACTCTCGGCGCCTCC
ACTACCCATGGCTACCTCCTCCTCCTCCCGGCCAACTCCACCACCTTCTTCTCCCCGCTC
CTCGCTGCCCTCCTCGCCGTCACCTCGCTGCTCTGGCTCGTCCCGGGCGGCCCCGCGTGG
GCGCTCTCCCGCTGCCGCCGGCCCCCGCCCGGCGCGCCGGGCGCGCTCGCCGCGCTCGCC
GGCCCCGCCGCGCACCGCGCGCTCGCGGCCATGTCGAGGTCCGTGCCTGGCGGCGCCGCC
CTGGCGTCCTTCTCCGTCGGCCTCACGCGTTTCGTCGTGGCCAGCCGCCCCGACACGGCG
CGGGAGCTCCTGTCCAGCGCCGCGTTCGCCGACCGCCCCGTGAAGGACGCGGCGCGGGGT
TTGCTCTTCCACCGCGCCATGGGGTTCGCGCCCTCCGGCGACTACTGGCGCGCGCTCCGC
CGCGTCAGCGCCAACCACCTCTTCACCCCTCGCCGCGTCGCCGCCTCGGCCCCGCGACGC
CTCGCCATCGGCGAGCGCATGCTAGACCGCCTGTCCGCCCTCGCCGGCGGCGAGATCGGC
ATGAGGCGCGTGCTCCACGCGGCGTCCCTGGACCACGTCATGGACACCGTCTTCGGGACG
CGCTACGACGGCGACAGCCAGGAGGGCGCCGAGCTCGAGGCCATGGTGAAGGAAGGGTAC
GACCTCCTCGGGATGTTCAACTGGGGAGACCACCTGCCGCTGCTCAAATGGCTCGACCTG
CAAGGCGTGAGGAGGAGGTGCAGGACGCTGGTGCAACGAGTCGACGTGTTCGTCCGAAGC
ATCATCGACGAGCACAGGCAGAGGAAGCGCCGCACCGGCGGCAATGGCGGAGGCGAGGAG
CTCCCCGGCGACTTCGTCGACGTGTTGCTCGGGTTGCAGGGGGAGGAGAAGATGACGGAG
TCCGACATGGTCGCCGTTCTCTGGGAGATGATCTTTCGGGGGACGGACACGGTGGCGATT
CTGCTGGAATGGATCATGGCGAGGATGGTGCTGCACCCGGACATCCAGGCGAAGGCGCAG
GCGGAGCTCGACGCCGTCGTCGGCCGCGGGCGCGCCGTGTCGGACGGCGACGTCGCCGGC
CTGCGCTACCTCCAGTGCGTCGTGAAGGAGGCGCTCCGCGTGCACCCGCCGGGCCCGCTC
CTGTCGTGGGCGCGCCTCGCCGTGCGCGACGCGCACGTCGGCGGCCACGTGGTCCCCGCG
GGCACCACGGCCATGGTCAACATGTGGGCCATCGCGCACGACCCGGAGCTCTGGCCGGAG
CCCGACGAGTTCCGGCCGGAGCGGTTCGCGGAGGAGGACGTCAGCGTGCTCGGCGGCGAC
CTCCGCCTCGCGCCGTTCGGCGCGGGGCGGCGCGCCTGCCCGGGCAAGACGCTCGCGCTC
GCCACCGTCCACCTCTGGCTCGCGCAGCTGCTGCACCGCTTCGAGTGGGCACCGGTCGGC
GGCGGCGTCCACTTGTTGGAGCGCCTGAACATGTCGCTGGAGATGGAGAAGCCTCTCGTG
TGCAAGGCTAAACCTAGGTGGTGATGATCAAGGAGTATGGGGCTGTTTGGTTGGTTGCTG
CCCTGAGTAACATAACATGCCTGAAATTTCTGTGCGCCTGAGTGGCATGTGAGAAGACCA
ATGCATCTAACCTGGTCAGGCAGCTTGAGTATATGCTTGTTTGGTTGGTTGTTGCTGCCT
GAGAAACAAATATGCAATTACGCCTTTAA