Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0407400-00
CDS Infomation

cds chromosome:IRGSP-1.0:3:16729501:16735109:-1 gene:Os03g0407400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LONG KERNEL 3 description:Similar to Grain length and weight protein. (Os03t0407400-00)
Sequence

ATGGCAATGGCGGCGGCGCCCCGGCCCAAGTCGCCGCCGGCGCCGCCCGACCCATGCGGC
CGCCACCGCCTCCAGCTCGCCGTCGACGCGCTCCACCGCGAGATCGGATTCCTCGAGGGT
GAAATAAATTCAATCGAAGGGATCCACGCTGCCTCCAGATGCTGCAGAGAGGTTGACGAA
TTCATCGGAAGAACTCCTGATCCATTCATAACGATTTCATCGGAGAAGCGAAGTCATGAT
CATTCTCACCACTTCTTGAAGAAGTTTCGCTGTTTGTGCAGAGCAAGTGCGTGCTGCCTC
AGCTACCTCTCCTGGATCTGCTGCTGCAGCAGCGCCGCCGGCGGCTGCTCATCCTCCTCC
TCCTCCTCCTTCAACCTCAAGAGGCCGAGCTGCTGCTGCAACTGCAACTGCAACTGCTGC
TCCTCCTCCTCCTCCTCATGTGGGGCGGCGTTAACGAAGAGTCCGTGTCGCTGCCGCCGC
CGCAGCTGCTGCTGCCGTCGCTGCTGCTGCGGCGGCGTCGGCGTCCGCGCGTGCGCGAGC
TGCAGCTGCTCCCCGCCGTGCGCGTGCTGCGCGCCGCCGTGCGCGGGATGCTCGTGCCGC
TGCACCTGCCCGTGCCCGTGCCCCGGCGGCTGCTCCTGCGCGTGCCCGGCGTGCAGGTGC
TGCTGCGGCGTCCCTCGTTGCTGCCCCCCCTGCTTGTGA

Peptide Sequence

PEP ID

Os03t0407400-00
PEP Infomation

pep chromosome:IRGSP-1.0:3:16729501:16735109:-1 gene:Os03g0407400 transcript:Os03t0407400-00 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LONG KERNEL 3 description:Similar to Grain length and weight protein. (Os03t0407400-00)
Sequence

MAMAAAPRPKSPPAPPDPCGRHRLQLAVDALHREIGFLEGEINSIEGIHAASRCCREVDE
FIGRTPDPFITISSEKRSHDHSHHFLKKFRCLCRASACCLSYLSWICCCSSAAGGCSSSS
SSSFNLKRPSCCCNCNCNCCSSSSSSCGAALTKSPCRCRRRSCCCRRCCCGGVGVRACAS
CSCSPPCACCAPPCAGCSCRCTCPCPCPGGCSCACPACRCCCGVPRCCPPCL

Transcript Sequence

Transcript ID

Os03t0407400-00
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:16729501:16735109:-1 gene:Os03g0407400 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:LONG KERNEL 3 description:Similar to Grain length and weight protein. (Os03t0407400-00)
Sequence

GATCATCTCCATTATCGGAACTTCGGAGTGACATGGCAATGGCGGCGGCGCCCCGGCCCA
AGTCGCCGCCGGCGCCGCCCGACCCATGCGGCCGCCACCGCCTCCAGCTCGCCGTCGACG
CGCTCCACCGCGAGATCGGATTCCTCGAGGGTGAAATAAATTCAATCGAAGGGATCCACG
CTGCCTCCAGATGCTGCAGAGAGGTTGACGAATTCATCGGAAGAACTCCTGATCCATTCA
TAACGATTTCATCGGAGAAGCGAAGTCATGATCATTCTCACCACTTCTTGAAGAAGTTTC
GCTGTTTGTGCAGAGCAAGTGCGTGCTGCCTCAGCTACCTCTCCTGGATCTGCTGCTGCA
GCAGCGCCGCCGGCGGCTGCTCATCCTCCTCCTCCTCCTCCTTCAACCTCAAGAGGCCGA
GCTGCTGCTGCAACTGCAACTGCAACTGCTGCTCCTCCTCCTCCTCCTCATGTGGGGCGG
CGTTAACGAAGAGTCCGTGTCGCTGCCGCCGCCGCAGCTGCTGCTGCCGTCGCTGCTGCT
GCGGCGGCGTCGGCGTCCGCGCGTGCGCGAGCTGCAGCTGCTCCCCGCCGTGCGCGTGCT
GCGCGCCGCCGTGCGCGGGATGCTCGTGCCGCTGCACCTGCCCGTGCCCGTGCCCCGGCG
GCTGCTCCTGCGCGTGCCCGGCGTGCAGGTGCTGCTGCGGCGTCCCTCGTTGCTGCCCCC
CCTGCTTGTGATCGATCGATCGATTGAGCGAAGCTGCACTGATTGGTTAATTAATTAGTT
CTCGATGATGATCGATCGAGCTGCGCGCGTACTTAATTAGCTAGCTAGGTTCTGGTGTTA
ATTAGTTCCTCATCGATGCATATGTTGATTGCCTTGCTCTGCTTGCGGTTATCTGTAATT
TGGCTTTGCTGCCATGATGAGTACGTGATTGCTGATTTATTTTAC