Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0407000-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:16696295:16700996:-1 gene:Os03g0407000 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os03t0407000-01)
Sequence

ACAATAGAAAATGCAAGGGAATGGGTGAACACAAACTTCATTGCTGAGGGTGGCACTGAC
ATCATGCATCCATTGAGTGAGGCAATAGCTTTGCTATCAAACTCTCACAATGCACTTCCA
CAAATCTTTCTTGTGACTGATGGATCTGTTGAGGATGAACGGAATATTTGCCGCACTGTG
AAAGAACAGCTCGCAACTAGAGGATCTAAGTCCCCCAGGATTTCTACTTTTGGACTAGGC
TCTTATTGCAACCACTATTTCCTGAGGATGTTGGCATCCATTGGCAAGGGGCATTATGAT
GCTGCATTTGATACAGGATCAATTGAGGGTCGGATGGTTCAGTGGTTTCAGAAAGCTTCA
AGCACAATAGTGATAAATATTTCCATTGATGCCACTAAGTACATTCGAGAATTTGAAGTG
GATTCTGAATATATTCAAGATATTTCTGCAAAATGCCCACTATGTGTGTCTGGGAGATAC
CAAGGCAAGCTTCCAGAGACACTTACTGCCAAGGGTTACTTGGCTGACATGAGCGAAATA
TCGATTGAATTGAGGGTCCAACATGTAAAGGATATTTCTCTTGACAAAGTGTTAGCAAAG
CAGCAGATGGATCTTCTCACAGCAAAAGCATGGTTTTATGAAAACAATCAACTAGAGATG
AAGGTGGTAAAATTAAGTATACAAAACAGCATTCCTTCGGAGTACACACGCACTATCCTA
CTTCAAAACTTCGTGGAAAAAATAGAACAGGGAAAGCAGAAGCCAAAGAAAAACAGCACC
CAGAATGAGCAATCAGCGACGTCGCTCAACGGACTGACGCTCGGGTTCGGTGACACAGCT
GCAACGAGGGAGAACCTTTCCGCTGGGTTCGGGGACACGAAACCACCAGAGAGGTTCGAG
ATGTTCGACAAGGCCGTCGGCTGCTGCAGCCGCCTCACGGACTGCTGCTGCTGCATGTGC
TTCATCAACACCTGCAGCAAGATGAACGACCGGTGCGCCATCGTCATGGTGCAGCTGTGC
GGCGCGCTCTCGTGCCTCGCATGCTTCGAGTGCTGCTCTCTGTGCTGCGGCGGGTCTGAC
TGA

Peptide Sequence

PEP ID

Os03t0407000-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:16696295:16700996:-1 gene:Os03g0407000 transcript:Os03t0407000-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os03t0407000-01)
Sequence

TIENAREWVNTNFIAEGGTDIMHPLSEAIALLSNSHNALPQIFLVTDGSVEDERNICRTV
KEQLATRGSKSPRISTFGLGSYCNHYFLRMLASIGKGHYDAAFDTGSIEGRMVQWFQKAS
STIVINISIDATKYIREFEVDSEYIQDISAKCPLCVSGRYQGKLPETLTAKGYLADMSEI
SIELRVQHVKDISLDKVLAKQQMDLLTAKAWFYENNQLEMKVVKLSIQNSIPSEYTRTIL
LQNFVEKIEQGKQKPKKNSTQNEQSATSLNGLTLGFGDTAATRENLSAGFGDTKPPERFE
MFDKAVGCCSRLTDCCCCMCFINTCSKMNDRCAIVMVQLCGALSCLACFECCSLCCGGSD

Transcript Sequence

Transcript ID

Os03t0407000-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:16696295:16700996:-1 gene:Os03g0407000 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os03t0407000-01)
Sequence

AAACAATAGAAAATGCAAGGGAATGGGTGAACACAAACTTCATTGCTGAGGGTGGCACTG
ACATCATGCATCCATTGAGTGAGGCAATAGCTTTGCTATCAAACTCTCACAATGCACTTC
CACAAATCTTTCTTGTGACTGATGGATCTGTTGAGGATGAACGGAATATTTGCCGCACTG
TGAAAGAACAGCTCGCAACTAGAGGATCTAAGTCCCCCAGGATTTCTACTTTTGGACTAG
GCTCTTATTGCAACCACTATTTCCTGAGGATGTTGGCATCCATTGGCAAGGGGCATTATG
ATGCTGCATTTGATACAGGATCAATTGAGGGTCGGATGGTTCAGTGGTTTCAGAAAGCTT
CAAGCACAATAGTGATAAATATTTCCATTGATGCCACTAAGTACATTCGAGAATTTGAAG
TGGATTCTGAATATATTCAAGATATTTCTGCAAAATGCCCACTATGTGTGTCTGGGAGAT
ACCAAGGCAAGCTTCCAGAGACACTTACTGCCAAGGGTTACTTGGCTGACATGAGCGAAA
TATCGATTGAATTGAGGGTCCAACATGTAAAGGATATTTCTCTTGACAAAGTGTTAGCAA
AGCAGCAGATGGATCTTCTCACAGCAAAAGCATGGTTTTATGAAAACAATCAACTAGAGA
TGAAGGTGGTAAAATTAAGTATACAAAACAGCATTCCTTCGGAGTACACACGCACTATCC
TACTTCAAAACTTCGTGGAAAAAATAGAACAGGGAAAGCAGAAGCCAAAGAAAAACAGCA
CCCAGAATGAGCAATCAGCGACGTCGCTCAACGGACTGACGCTCGGGTTCGGTGACACAG
CTGCAACGAGGGAGAACCTTTCCGCTGGGTTCGGGGACACGAAACCACCAGAGAGGTTCG
AGATGTTCGACAAGGCCGTCGGCTGCTGCAGCCGCCTCACGGACTGCTGCTGCTGCATGT
GCTTCATCAACACCTGCAGCAAGATGAACGACCGGTGCGCCATCGTCATGGTGCAGCTGT
GCGGCGCGCTCTCGTGCCTCGCATGCTTCGAGTGCTGCTCTCTGTGCTGCGGCGGGTCTG
ACTGAGGTAGGACCAAATGCTGAAATGTGCATAGAATTCTACTGTATAGGATGGGCACCA
CATATATTTGTATACAATAGTTCAAGAAAGACCCTTGTGTGGATGTTTTGATATCGGCCG
TCTGTAAAAACCTATAAGATGGAAATCATCTGAGCACTGTCCATTTGATTTCAAGAGTTG
AAAGAGTACATAAAAGAACTATGTACAGT