Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0403600-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:16457908:16459449:1 gene:Os03g0403600 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os03t0403600-01)
Sequence

GCCGGCGACGCCGCGCGGGCCGACCTTGGGGCCCTCGTCGACGGCCTCGCCGCCGACGGC
AACACCAACATCAGGGCGGGCCTCGAGATCGGCCTCGCCGTCGCCGCCGGCCGCCGCCTC
ACCGCCGGCCGCGCGGTGAACGTCATGCTCATGTCCGACGGGCAGCAGAACCGGGGCGAC
GCGACGCGGCTGGACCCCGGCGGCGTGCCCGTCCACACCTTCGGCCTCGGCGCCGACCAC
GACCCCGCCGTGCTCCAGGCGATCGCCGGGAAGAGCCGGGAGGGGATGTTCCACTACGTC
GCCGACGGCGTCAACCTCACCGCGCCCTTCTCGCAGCTCCTCGGCGGCCTCCTCACCATC
ATCGCGCAGGACCTGGAGCTGACGGTGACGCGGGTCGATGGCGAGGCCGCCATCAAGAAG
GTGGACGCCGGCACGTACCCGCAGGCGGCCGCCGCCGACGGGTCGTCCGTGACCGTCCAG
TTCGGGACGCTGTACAGCGCGGAGGTGCGCAGGGTGCTCGTCTACCTCGCGCTGGAGGAC
AGCACCGCCTTCCCGCCGTACGACGCGGAGGTGGTGGAGGCCCAGTTCAGGTACAGCCTC
CAGGGCGCGACGGTGGCGTCCAACCCTGACCCGGTGAGCATCCGCCGCAGCGGGAGCGCG
CCGGAGCCGAGCGAGGAGGCGCCGGCGAGGAAGCCGGAGGTGGAGACGGAGATGGCGCGG
CGGCGGCACGCGGAGTCGATCCGGGAGGCGCGGAGCATGGCGGACGGGAAGGAGCTGGAG
CGCGCGAGGACGAGGCTGGTGGAGGCGCAGAACGCGCTGGAGGACGTACTGGACCAGGCG
AACCCGATGGTGGACATGCTCCGGGAGGAGCTCCTGCAGCTTCTGCGGCTGATGGAGACG
CAGGAGGCGTACGAGCGGGCGGGGCGGGCGTACGCCGTGTCGTCGCTAGCGTCCCACGAC
CGGCAGCGGTTCGCCGCCCGCGGCGACGCGGAGGGCGTGCGGCTCTTCGCGACGCCGCGG
ATGGACGCGTACCTGGAGCAGGCGTGGCGGTTCGACGAGGACCCCGGCGGCGCGGCGCTG
CCGTCGGCGGAGGAGGACGTGAGGCAGGAGGTCGCCGCCAACCCGCTGGCGCCCGTCGCC
GGGCAGATCGCGTTCTACGTCAGGTCGGCCATCCAGGCGCTGCAGGCCATCGACAAGATC
TTCGCCAGCGTCGCCGCCGCCACCTCCACCTCCACCTCCACCTCCACCTAG

Peptide Sequence

PEP ID

Os03t0403600-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:16457908:16459449:1 gene:Os03g0403600 transcript:Os03t0403600-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os03t0403600-01)
Sequence

AGDAARADLGALVDGLAADGNTNIRAGLEIGLAVAAGRRLTAGRAVNVMLMSDGQQNRGD
ATRLDPGGVPVHTFGLGADHDPAVLQAIAGKSREGMFHYVADGVNLTAPFSQLLGGLLTI
IAQDLELTVTRVDGEAAIKKVDAGTYPQAAAADGSSVTVQFGTLYSAEVRRVLVYLALED
STAFPPYDAEVVEAQFRYSLQGATVASNPDPVSIRRSGSAPEPSEEAPARKPEVETEMAR
RRHAESIREARSMADGKELERARTRLVEAQNALEDVLDQANPMVDMLREELLQLLRLMET
QEAYERAGRAYAVSSLASHDRQRFAARGDAEGVRLFATPRMDAYLEQAWRFDEDPGGAAL
PSAEEDVRQEVAANPLAPVAGQIAFYVRSAIQALQAIDKIFASVAAATSTSTSTST

Transcript Sequence

Transcript ID

Os03t0403600-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:16457908:16459449:1 gene:Os03g0403600 gene_biotype:protein_coding transcript_biotype:protein_coding description:von Willebrand factor, type A domain containing protein. (Os03t0403600-01)
Sequence

TCGCCGGCGACGCCGCGCGGGCCGACCTTGGGGCCCTCGTCGACGGCCTCGCCGCCGACG
GCAACACCAACATCAGGGCGGGCCTCGAGATCGGCCTCGCCGTCGCCGCCGGCCGCCGCC
TCACCGCCGGCCGCGCGGTGAACGTCATGCTCATGTCCGACGGGCAGCAGAACCGGGGCG
ACGCGACGCGGCTGGACCCCGGCGGCGTGCCCGTCCACACCTTCGGCCTCGGCGCCGACC
ACGACCCCGCCGTGCTCCAGGCGATCGCCGGGAAGAGCCGGGAGGGGATGTTCCACTACG
TCGCCGACGGCGTCAACCTCACCGCGCCCTTCTCGCAGCTCCTCGGCGGCCTCCTCACCA
TCATCGCGCAGGACCTGGAGCTGACGGTGACGCGGGTCGATGGCGAGGCCGCCATCAAGA
AGGTGGACGCCGGCACGTACCCGCAGGCGGCCGCCGCCGACGGGTCGTCCGTGACCGTCC
AGTTCGGGACGCTGTACAGCGCGGAGGTGCGCAGGGTGCTCGTCTACCTCGCGCTGGAGG
ACAGCACCGCCTTCCCGCCGTACGACGCGGAGGTGGTGGAGGCCCAGTTCAGGTACAGCC
TCCAGGGCGCGACGGTGGCGTCCAACCCTGACCCGGTGAGCATCCGCCGCAGCGGGAGCG
CGCCGGAGCCGAGCGAGGAGGCGCCGGCGAGGAAGCCGGAGGTGGAGACGGAGATGGCGC
GGCGGCGGCACGCGGAGTCGATCCGGGAGGCGCGGAGCATGGCGGACGGGAAGGAGCTGG
AGCGCGCGAGGACGAGGCTGGTGGAGGCGCAGAACGCGCTGGAGGACGTACTGGACCAGG
CGAACCCGATGGTGGACATGCTCCGGGAGGAGCTCCTGCAGCTTCTGCGGCTGATGGAGA
CGCAGGAGGCGTACGAGCGGGCGGGGCGGGCGTACGCCGTGTCGTCGCTAGCGTCCCACG
ACCGGCAGCGGTTCGCCGCCCGCGGCGACGCGGAGGGCGTGCGGCTCTTCGCGACGCCGC
GGATGGACGCGTACCTGGAGCAGGCGTGGCGGTTCGACGAGGACCCCGGCGGCGCGGCGC
TGCCGTCGGCGGAGGAGGACGTGAGGCAGGAGGTCGCCGCCAACCCGCTGGCGCCCGTCG
CCGGGCAGATCGCGTTCTACGTCAGGTCGGCCATCCAGGCGCTGCAGGCCATCGACAAGA
TCTTCGCCAGCGTCGCCGCCGCCACCTCCACCTCCACCTCCACCTCCACCTAGCTAGCTT
AGCTTGCTCGTCTTCATCTCGGATAATAAGCGCTAGCTACGTACGCGGCCATGCCATGCT
TACGAGCATGCATTATTGCATCTGATTGCAAATGTGTGTAGCTCATACTCGCGGTCTTAG
GCTCTTGGCTACGTTAGTTGCGTCCTCTTCATCCTAATATTAATTTTCCAGTTGTATCGG
TTAATTCTCTAGTTAATTGAATAAGAATTCATATCGTATTGTACCTTAATCGCTACTACT
CCCTTCGTCCCTTAATCTAAGAAATTTTGATATTTTGCTGGT