Plant GARDEN
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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0402800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:16407699:16410007:-1 gene:Os03g0402800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TIFY GENE 10A description:Tify domain containing protein. (Os03t0402800-01);Similar to ZIM motif family protein, expressed. (Os03t0402800-02)
Sequence

ATGGCTTCCGCGAAATCCGGGGAGAGGGGGAGCAGCAGCTTCGCCATGGCCTGCAGCCTG
CTCAGCCGCTACGTCAGGCAGAACGGCGCAGCCGCCGGCGAGCTCGGCCTCGGCATCAGA
GGTGAAGCCGATGCGAACAAGGGGAAGGAGACCATGGAGCTGTTCCCCCAGAATTCCGGG
TTCGGCTCTGAAGCTGCTGCCGTGAAGGAGACCCCGGATGCGAGGGAGCAAGAGAAGCGC
CAATTAACCATCTTCTACGGTGGGAAGGTCCTGGTGTTTGATGACTTCCCAGCTGAGAAG
GCCAAGGACCTGATGCAGATGGCCAGCAAGAGTTCCTCCACAGCGCAGAACTGTGTCCTT
CTTCCATCTTCCGCTACTGCAACCGTTGCCGACAACACTAAGGTGTCTGCTGTACCAGCC
CCAGCAAGTGCACTTCCTGTTGCTCAGGCCAATGCCCCGAAACCTGTTCGTCCAAATGCT
GCTGATCTGCCTCAGGCTAGGAAGGCGTCGCTTCACCGGTTCCTCGAGAAAAGAAAGGAT
CGCCTTCAGGCTAAAGCACCCTACCAGGGTTCCCCTTCAGATGCTTCTCCGGTCAAGAAG
GAGCTGCAGGAGAGTCAGCCATGGCTTGGGTTAGGACCTCAGGTTGCCGCTCCCGACCTG
AGCTTGCGGCAGGAATCGAGCCAATGA

Peptide Sequence

PEP ID

Os03t0402800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:16407699:16410007:-1 gene:Os03g0402800 transcript:Os03t0402800-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TIFY GENE 10A description:Tify domain containing protein. (Os03t0402800-01);Similar to ZIM motif family protein, expressed. (Os03t0402800-02)
Sequence

MASAKSGERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADANKGKETMELFPQNSG
FGSEAAAVKETPDAREQEKRQLTIFYGGKVLVFDDFPAEKAKDLMQMASKSSSTAQNCVL
LPSSATATVADNTKVSAVPAPASALPVAQANAPKPVRPNAADLPQARKASLHRFLEKRKD
RLQAKAPYQGSPSDASPVKKELQESQPWLGLGPQVAAPDLSLRQESSQ

Transcript Sequence

Transcript ID

Os03t0402800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:16407699:16410007:-1 gene:Os03g0402800 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TIFY GENE 10A description:Tify domain containing protein. (Os03t0402800-01);Similar to ZIM motif family protein, expressed. (Os03t0402800-02)
Sequence

AAGACAACTCAGAGACAGACAAGGACGAGCAACCCGCAACCGCGACCAGAGGAGAAGACT
CGATCGAATCGAATCGAAGCGGGAGGATTTCGGGGGTCCGTGACTCCGTTCGGAGAAAAG
GATTCAGCTTGTGGGCAGAAGAAGAAGAAGAAGATGGCTTCCGCGAAATCCGGGGAGAGG
GGGAGCAGCAGCTTCGCCATGGCCTGCAGCCTGCTCAGCCGCTACGTCAGGCAGAACGGC
GCAGCCGCCGGCGAGCTCGGCCTCGGCATCAGAGGTGAAGCCGATGCGAACAAGGGGAAG
GAGACCATGGAGCTGTTCCCCCAGAATTCCGGGTTCGGCTCTGAAGCTGCTGCCGTGAAG
GAGACCCCGGATGCGAGGGAGCAAGAGAAGCGCCAATTAACCATCTTCTACGGTGGGAAG
GTCCTGGTGTTTGATGACTTCCCAGCTGAGAAGGCCAAGGACCTGATGCAGATGGCCAGC
AAGAGTTCCTCCACAGCGCAGAACTGTGTCCTTCTTCCATCTTCCGCTACTGCAACCGTT
GCCGACAACACTAAGGTGTCTGCTGTACCAGCCCCAGCAAGTGCACTTCCTGTTGCTCAG
GCCAATGCCCCGAAACCTGTTCGTCCAAATGCTGCTGATCTGCCTCAGGCTAGGAAGGCG
TCGCTTCACCGGTTCCTCGAGAAAAGAAAGGATCGCCTTCAGGCTAAAGCACCCTACCAG
GGTTCCCCTTCAGATGCTTCTCCGGTCAAGAAGGAGCTGCAGGAGAGTCAGCCATGGCTT
GGGTTAGGACCTCAGGTTGCCGCTCCCGACCTGAGCTTGCGGCAGGAATCGAGCCAATGA
ATCAATGCTCAATTCTGAGATGCCCCTCTCATCAGATGATTCAGTCATAGAGGTTATCAC
AACTCTTGAATTGGGTGTTTTGTGTTAGGAGATGATCCGATGACAAGGCGATGTTCTTCT
GATATATATACTAGGATTGAATGTAAAGAAAGTAGCTGATGATTATGACCAGTAATCTGA
ATCAAATTGCTATGATAGAAAGCAGAAGATTCTGTAATCAGTACAACCCAAGAAACCTCA
TTTGTACCAATTCAATATCGTTTTGCTTTGGCATTGCCATGTAGAAGCAAAGCAAATGTA
CTGCTAATATATACACATCACAAGATTGATTGTT