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TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0399800-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:16209132:16210009:1 gene:Os03g0399800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mannose-binding lectin domain containing protein. (Os03t0399800-01)
Sequence

GAGCCCATCCCATCTCATCTCGCCCTCTTCTTGGTTTTTCTCGTTCTGCTAGCTAGCTTC
ATCGACGAAATGGCCGGGTCGACGGTGGCGAAGATCGGGCCGTGGGGCGGCGACTACGGC
GGCCGCGACCACGACGTGACGGTGGCGCCGCGGCGGCTGCGGAGCGTGTCCCTCCGCCAC
GGCAAGATCATCGACTCCATCGCCTTCACCTACGACGGCGGCGACGGCGACGGCGAGCTC
CACTCCGTCGGGCCGTGGGGCGGCGACGGCGCCGAGCTCCCCGAGGCGGTGGCGAGGAAG
CTCGCCGCCGGGGAGCGGCCCCCCGGCGCCACGGTGGCGGAGTTCACGTTCGACGCCGGC
GAGCGCGTCACGGAGGTGCACGGCACGGTGGGGCCGTTCGGCGACCGGGACAGCCTCGTC
ACCTCGCTCAAGCTCGTCACCGACCGCCGCACCATCGGGCCCTTCGGCTACGGCGCCGGG
ACGCCCTTCAGCGTCCCCGTGCGCGGCGACGGCGGCGTCGTCGGCTTCTTCGTCCGCGCC
GGCGCCTACCTGGAGGCCATCGGCGTCTACGTCAACCCGTGCATCCCCTCCGAGAAATGA

Peptide Sequence

PEP ID

Os03t0399800-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:16209132:16210009:1 gene:Os03g0399800 transcript:Os03t0399800-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mannose-binding lectin domain containing protein. (Os03t0399800-01)
Sequence

EPIPSHLALFLVFLVLLASFIDEMAGSTVAKIGPWGGDYGGRDHDVTVAPRRLRSVSLRH
GKIIDSIAFTYDGGDGDGELHSVGPWGGDGAELPEAVARKLAAGERPPGATVAEFTFDAG
ERVTEVHGTVGPFGDRDSLVTSLKLVTDRRTIGPFGYGAGTPFSVPVRGDGGVVGFFVRA
GAYLEAIGVYVNPCIPSEK

Transcript Sequence

Transcript ID

Os03t0399800-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:16209132:16210009:1 gene:Os03g0399800 gene_biotype:protein_coding transcript_biotype:protein_coding description:Mannose-binding lectin domain containing protein. (Os03t0399800-01)
Sequence

GCGAGCCCATCCCATCTCATCTCGCCCTCTTCTTGGTTTTTCTCGTTCTGCTAGCTAGCT
TCATCGACGAAATGGCCGGGTCGACGGTGGCGAAGATCGGGCCGTGGGGCGGCGACTACG
GCGGCCGCGACCACGACGTGACGGTGGCGCCGCGGCGGCTGCGGAGCGTGTCCCTCCGCC
ACGGCAAGATCATCGACTCCATCGCCTTCACCTACGACGGCGGCGACGGCGACGGCGAGC
TCCACTCCGTCGGGCCGTGGGGCGGCGACGGCGCCGAGCTCCCCGAGGCGGTGGCGAGGA
AGCTCGCCGCCGGGGAGCGGCCCCCCGGCGCCACGGTGGCGGAGTTCACGTTCGACGCCG
GCGAGCGCGTCACGGAGGTGCACGGCACGGTGGGGCCGTTCGGCGACCGGGACAGCCTCG
TCACCTCGCTCAAGCTCGTCACCGACCGCCGCACCATCGGGCCCTTCGGCTACGGCGCCG
GGACGCCCTTCAGCGTCCCCGTGCGCGGCGACGGCGGCGTCGTCGGCTTCTTCGTCCGCG
CCGGCGCCTACCTGGAGGCCATCGGCGTCTACGTCAACCCGTGCATCCCCTCCGAGAAAT
GAATTGAATTGAATTTGATCAACACCACCGATATGATATGATCCATCCAGTTACCACCCG
GCCGTGCTTAATTTGAATGTGTTCTCAACTGTTTCATATTTTTTTTGATTTATGGCCTAA
TGTTTCTCAAACTATGGTGCATTCAAGAATAATAACAGTGCAGTATTATGTGCTCACAGA
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