Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0399000-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:16151375:16153554:1 gene:Os03g0399000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 12 description:Pectin lyase fold domain containing protein. (Os03t0399000-01)
Sequence	ATGTCGTCGGACGACGACGACGATGGGTCGGGGCGCACCAAGCTGATCATCGCCGCCGTG GTCATGCTGCTCGCCATCGTGCTCGGCACGGTGGCCTACGTGGTGGTGGACCGCGCCGGC GACGACGACGGCCTGAGCAAGCGCGGCATGAAGTCGACGATGCGCAGCGTGGACCTCTTC TGCGCGCCCACGGACTACCGCGTGGCGTGCAAGGACACCCTGGAGCGCGTCCTGGCGCGG TCGTCGGACCCGGCCGACCACCCGCACGCCGCCGCCGCCGCGGCGATCACGGCGGTGGAG CGGGAGCTGGCGCGCGGGTTCGACCGGTCGTCGGTGCTGGAGGCGGTGCGGGCGAGCAAC GACAGCCGGGTCGCCGAGGCCCTCCGCGACTGCCGGACGCTGCTCGGCGACTGCCGTGGC GACGTGAGCCGGGCGCTCACCAGCATCGCGTGGCGCGGCGTGGACGCCGTGTCGCAGGAC CTCCAGGCGTGGCTCAGCGCGGTGATCACGTTCCAGGGCTCCTGCGTCGACATGTTCCCG CAGGGCCCCATCAAGGACCAGGTGAGGGAGGCCATGGAGAAGGCCCGCGAGATCTCCAGC AACGCCATCGCCATCATCCAGCAGGGCGCCGCCTTCGCCGCCATGCTCGACCTCCACGCC AGCGAGAGCCACGCCGCCGAAGGCGAGGAGCTCGACGTCGACCACGACATCCAGCACCAC GTGGACCGCCACCTCGAGGATCAGTCGTTACCACCAGTCCCGCCGTGGTTGTCCGACGAG GACCGGAGGATGCTCACCAGCGGCGAGGAGTTCGTCGCCGGGCTGACCCCGAACGTGACG GTGGCCAAGGACGGCAGCGGCGACTTCACCAACATCTCGGCGGCGCTGGACGCCCTGCCG GAGGCGTACGCCGGGAAGTACATCATCTACGTGAAGGAAGGCGTGTACGACGAGACGGTG AACGTCACCAGCCGGATGGCCAACATCACCATGTACGGCGACGGCTCCAAGAAATCCATC GTCACCGGCAGCAAGAACATCGCCGACGGCGTCAGGATGTGGAAGACAGCCACCTTCGCG GTGGACGGCGACCGGTTCACGGCGATGAGGCTGGGGATACGGAACACGGCGGGGGAGGAG AAGCAGCAGGCGCTGGCGCTGCGGGTGAAGGCGGACAAGAGCATCTTCTTCAACTGCCGG ATCGAGGGCAACCAGGACACGCTGTTCGCGCAGGCCTACCGCCAGTTCTACCGGAGCTGC GTCATCTCCGGCACCGTCGACTTCATCTTCGGCGACGCGGCCGCCATGTTCCAGCGCTGC ATCATCCTCGTCAAGCCGCCGCTCCCGGGGAAGCCCGCCGTGGTGACCGCGCACGGGCGG CGCGACCGGCAGCAGACCACGGGGTTCGTGCTGCACCACAGCCAGGTGGTCGCCGACGAG GACTTCGCCGGCGCCGGCGGCGGGAGCAGCAACACGTCGTCGTCGTCGGGGGCGGCGCCG AGGCTGGCGTACCTGGGGCGGCCGTGGAAGGAGCACGCGAGGACGATCGTGATGGAGTCG GTGATCGGAGGGTTCGTGCACGCGCAGGGGTACATGCCGTGGGAGGGGAAGGACAACCTG GGCGAGGCGTTCTACGGGGAGTACGGCAACAGCGGGCAAGGCGCCAACTCGACGGGGAGG ATGGAGATGCGGGGGTTCCACGTGCTGGACAGGGAGAAGGCCATGCAGTTCACGGTGGGC CGCTTCCTGCACGGCGCCGACTGGATCCCGGAGACCGGCACGCCCGTCACGATAGGCCTC TTCGGTGGCTAG

Peptide Sequence

PEP ID	Os03t0399000-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:16151375:16153554:1 gene:Os03g0399000 transcript:Os03t0399000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 12 description:Pectin lyase fold domain containing protein. (Os03t0399000-01)
Sequence	MSSDDDDDGSGRTKLIIAAVVMLLAIVLGTVAYVVVDRAGDDDGLSKRGMKSTMRSVDLF CAPTDYRVACKDTLERVLARSSDPADHPHAAAAAAITAVERELARGFDRSSVLEAVRASN DSRVAEALRDCRTLLGDCRGDVSRALTSIAWRGVDAVSQDLQAWLSAVITFQGSCVDMFP QGPIKDQVREAMEKAREISSNAIAIIQQGAAFAAMLDLHASESHAAEGEELDVDHDIQHH VDRHLEDQSLPPVPPWLSDEDRRMLTSGEEFVAGLTPNVTVAKDGSGDFTNISAALDALP EAYAGKYIIYVKEGVYDETVNVTSRMANITMYGDGSKKSIVTGSKNIADGVRMWKTATFA VDGDRFTAMRLGIRNTAGEEKQQALALRVKADKSIFFNCRIEGNQDTLFAQAYRQFYRSC VISGTVDFIFGDAAAMFQRCIILVKPPLPGKPAVVTAHGRRDRQQTTGFVLHHSQVVADE DFAGAGGGSSNTSSSSGAAPRLAYLGRPWKEHARTIVMESVIGGFVHAQGYMPWEGKDNL GEAFYGEYGNSGQGANSTGRMEMRGFHVLDREKAMQFTVGRFLHGADWIPETGTPVTIGL FGG

Transcript Sequence

Transcript ID	Os03t0399000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:16151375:16153554:1 gene:Os03g0399000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PECTIN METHYLESTERASE 12 description:Pectin lyase fold domain containing protein. (Os03t0399000-01)
Sequence	GTTCGTTTTTCCGCATGAGAAATATATAAAACTGATGCGCCGTCATCGTTGTCGCATCCA TCCATCCATCCATCGATCGGAGGAGTCGCCTCGCGCCGCCGCACCGGCCGTCGACGTCGT GACCCGCGCTAGCTAGCTCGCGCGGGCGGCAATGTCGTCGGACGACGACGACGATGGGTC GGGGCGCACCAAGCTGATCATCGCCGCCGTGGTCATGCTGCTCGCCATCGTGCTCGGCAC GGTGGCCTACGTGGTGGTGGACCGCGCCGGCGACGACGACGGCCTGAGCAAGCGCGGCAT GAAGTCGACGATGCGCAGCGTGGACCTCTTCTGCGCGCCCACGGACTACCGCGTGGCGTG CAAGGACACCCTGGAGCGCGTCCTGGCGCGGTCGTCGGACCCGGCCGACCACCCGCACGC CGCCGCCGCCGCGGCGATCACGGCGGTGGAGCGGGAGCTGGCGCGCGGGTTCGACCGGTC GTCGGTGCTGGAGGCGGTGCGGGCGAGCAACGACAGCCGGGTCGCCGAGGCCCTCCGCGA CTGCCGGACGCTGCTCGGCGACTGCCGTGGCGACGTGAGCCGGGCGCTCACCAGCATCGC GTGGCGCGGCGTGGACGCCGTGTCGCAGGACCTCCAGGCGTGGCTCAGCGCGGTGATCAC GTTCCAGGGCTCCTGCGTCGACATGTTCCCGCAGGGCCCCATCAAGGACCAGGTGAGGGA GGCCATGGAGAAGGCCCGCGAGATCTCCAGCAACGCCATCGCCATCATCCAGCAGGGCGC CGCCTTCGCCGCCATGCTCGACCTCCACGCCAGCGAGAGCCACGCCGCCGAAGGCGAGGA GCTCGACGTCGACCACGACATCCAGCACCACGTGGACCGCCACCTCGAGGATCAGTCGTT ACCACCAGTCCCGCCGTGGTTGTCCGACGAGGACCGGAGGATGCTCACCAGCGGCGAGGA GTTCGTCGCCGGGCTGACCCCGAACGTGACGGTGGCCAAGGACGGCAGCGGCGACTTCAC CAACATCTCGGCGGCGCTGGACGCCCTGCCGGAGGCGTACGCCGGGAAGTACATCATCTA CGTGAAGGAAGGCGTGTACGACGAGACGGTGAACGTCACCAGCCGGATGGCCAACATCAC CATGTACGGCGACGGCTCCAAGAAATCCATCGTCACCGGCAGCAAGAACATCGCCGACGG CGTCAGGATGTGGAAGACAGCCACCTTCGCGGTGGACGGCGACCGGTTCACGGCGATGAG GCTGGGGATACGGAACACGGCGGGGGAGGAGAAGCAGCAGGCGCTGGCGCTGCGGGTGAA GGCGGACAAGAGCATCTTCTTCAACTGCCGGATCGAGGGCAACCAGGACACGCTGTTCGC GCAGGCCTACCGCCAGTTCTACCGGAGCTGCGTCATCTCCGGCACCGTCGACTTCATCTT CGGCGACGCGGCCGCCATGTTCCAGCGCTGCATCATCCTCGTCAAGCCGCCGCTCCCGGG GAAGCCCGCCGTGGTGACCGCGCACGGGCGGCGCGACCGGCAGCAGACCACGGGGTTCGT GCTGCACCACAGCCAGGTGGTCGCCGACGAGGACTTCGCCGGCGCCGGCGGCGGGAGCAG CAACACGTCGTCGTCGTCGGGGGCGGCGCCGAGGCTGGCGTACCTGGGGCGGCCGTGGAA GGAGCACGCGAGGACGATCGTGATGGAGTCGGTGATCGGAGGGTTCGTGCACGCGCAGGG GTACATGCCGTGGGAGGGGAAGGACAACCTGGGCGAGGCGTTCTACGGGGAGTACGGCAA CAGCGGGCAAGGCGCCAACTCGACGGGGAGGATGGAGATGCGGGGGTTCCACGTGCTGGA CAGGGAGAAGGCCATGCAGTTCACGGTGGGCCGCTTCCTGCACGGCGCCGACTGGATCCC GGAGACCGGCACGCCCGTCACGATAGGCCTCTTCGGTGGCTAGCTCGCTCATCCATGCGT ACGTGTGTATGTTGATGCGTGCTAGGTGGGGGGTTGTGGGGTTAAATTCGTATGTACAAA ATGGTTACATGTGGAGCAAGCAGAAGAGAGAGATGCATTTTTTTTTCTTTG