Gene sequences

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Trait-Related Loci

Oryza sativa

CDS Sequence

CDS ID	Os03t0391000-01
CDS Infomation	cds chromosome:IRGSP-1.0:3:15661860:15665613:1 gene:Os03g0391000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 4A description:Similar to Cysteine protease ATG4A. (Os03t0391000-01)
Sequence	ATGACGAGCTTGCCTGGTAGGGGTGTATCGCCGTCTTCGTCTGATCCGTTGTGCGAGGGT AACGCTGCACCTTCTTCTTCTTCTAGCTCGGGGCAGGACCTGAAACAATTGAAGAACTCG ATCCTGTCCTGCGTTTTCAGCTCCCCTTTCAGTATATTTGAGGCGCACCAGGATTCGTCG GCGAACAGGTCGCTGAAACCGCACTCTGGATCCTATGCTTGGTCGAGGTTTTTGAGGAGG ATCGCGTGTACCGGCTCGATGTGGCGTTTCCTGGGCGCCTCCAAGGCTCTCACTTCAAGT GATGTGTGGTTCCTTGGTAAATGTTACAAGCTGTCGTCCGAGGAGTTATCTAATAGCTCG GATTGCGAAAGTGGGAATGCCGCATTTTTAGAGGACTTCTCATCAAGGATATGGATCACT TACAGGAAAGGCTTTGATGCCATCTCTGATTCCAAATATACTAGTGATGTCAACTGGGGC TGTATGGTCAGAAGCAGCCAAATGCTGGTTGCTCAGGCATTGATTTTCCACCATCTTGGA AGGTCTTGGAGAAAGCCCTCACAGAAGCCGTATAGCCCTGAATATATAGGGATCTTACAC ATGTTTGGTGATTCTGAAGCTTGTGCTTTCTCGATTCACAATTTACTTCAAGCTGGAAAG AGTTACGGTCTGGCTGCTGGATCATGGGTAGGTCCATACGCCATGTGCCGGGCATGGCAA ACCCTTGTCTGTACCAATAGGGAGCATCATGAAGCTGTAGATGGGAATGGGAATTTTCCT ATGGCTCTTTATGTGGTATCTGGTGATGAAGATGGTGAAAGAGGGGGAGCTCCAGTTGTT TGTATTGATGTTGCTGCTCAGCTTTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCT CCGATTCTTTTGTTGGTCCCTCTGGTTCTTGGTCTTGACAAACTTAATCCAAGGTACATT CCTTTACTAAAGGAGACATTGACATTTCCTCAAAGCTTGGGCATTTTGGGTGGAAAGCCT GGAACATCAACCTACATTGCTGGGGTACAGGATGACAGGGCGCTCTACCTAGACCCCCAT GAAGTTCAGCTGGCAGTTGATATTGCAGCTGATAACTTAGAGGCAGGCACTTCCTCATAT CACTGCAGCACTGTACGAGATTTGGCCCTAGACCTGATAGACCCGTCATTGGCTATCGGT TTTTACTGCCGTGACAAAGACGACTTTGATGATTTCTGTTCTCGGGCCTCTGAGCTAGTG GACAAAGCCAATGGAGCACCACTCTTCACCGTTGTGCAGTCGGTTCAACCTTCAAAACAA ATGTATAATGAGGAGAGTAGCTCAGGGGATGGCATGGACAGCATCAACGTTGAGGGTCTC GATGGCTCTGGTGAAACGGGAGAGGAGGAATGGCAGATTCTTTAG

Peptide Sequence

PEP ID	Os03t0391000-01
PEP Infomation	pep chromosome:IRGSP-1.0:3:15661860:15665613:1 gene:Os03g0391000 transcript:Os03t0391000-01 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 4A description:Similar to Cysteine protease ATG4A. (Os03t0391000-01)
Sequence	MTSLPGRGVSPSSSDPLCEGNAAPSSSSSSGQDLKQLKNSILSCVFSSPFSIFEAHQDSS ANRSLKPHSGSYAWSRFLRRIACTGSMWRFLGASKALTSSDVWFLGKCYKLSSEELSNSS DCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLG RSWRKPSQKPYSPEYIGILHMFGDSEACAFSIHNLLQAGKSYGLAAGSWVGPYAMCRAWQ TLVCTNREHHEAVDGNGNFPMALYVVSGDEDGERGGAPVVCIDVAAQLCCDFNKNQSTWS PILLLVPLVLGLDKLNPRYIPLLKETLTFPQSLGILGGKPGTSTYIAGVQDDRALYLDPH EVQLAVDIAADNLEAGTSSYHCSTVRDLALDLIDPSLAIGFYCRDKDDFDDFCSRASELV DKANGAPLFTVVQSVQPSKQMYNEESSSGDGMDSINVEGLDGSGETGEEEWQIL

Transcript Sequence

Transcript ID	Os03t0391000-01
Transcript Infomation	cdna chromosome:IRGSP-1.0:3:15661860:15665613:1 gene:Os03g0391000 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:AUTOPHAGY ASSOCIATED GENE 4A description:Similar to Cysteine protease ATG4A. (Os03t0391000-01)
Sequence	GAAGACGAATCCCCCCCACATCCCCATCGCTCGATTCCTTTCCATCCCTCGCCTCCGCGC GACGGCAGCGACAGCGGCGGCAGCGTTGCCGCTGTCCCCCCATCCCCTCGGGCGGCGGCG GCGGCGGCGGCGCGACCACCGATTCGGTTGGTGCGTGTTGCAGTACAATCGTGAAAGAAA AGGGAAATTGTAGGATTTCGCTTCGATAAGTTGACCGTATTGTGGATGTGATATGCACAC ATGCCCGTGTTATGTTAGGTAATATGTGTGTTAGGTAATGACGAGCTTGCCTGGTAGGGG TGTATCGCCGTCTTCGTCTGATCCGTTGTGCGAGGGTAACGCTGCACCTTCTTCTTCTTC TAGCTCGGGGCAGGACCTGAAACAATTGAAGAACTCGATCCTGTCCTGCGTTTTCAGCTC CCCTTTCAGTATATTTGAGGCGCACCAGGATTCGTCGGCGAACAGGTCGCTGAAACCGCA CTCTGGATCCTATGCTTGGTCGAGGTTTTTGAGGAGGATCGCGTGTACCGGCTCGATGTG GCGTTTCCTGGGCGCCTCCAAGGCTCTCACTTCAAGTGATGTGTGGTTCCTTGGTAAATG TTACAAGCTGTCGTCCGAGGAGTTATCTAATAGCTCGGATTGCGAAAGTGGGAATGCCGC ATTTTTAGAGGACTTCTCATCAAGGATATGGATCACTTACAGGAAAGGCTTTGATGCCAT CTCTGATTCCAAATATACTAGTGATGTCAACTGGGGCTGTATGGTCAGAAGCAGCCAAAT GCTGGTTGCTCAGGCATTGATTTTCCACCATCTTGGAAGGTCTTGGAGAAAGCCCTCACA GAAGCCGTATAGCCCTGAATATATAGGGATCTTACACATGTTTGGTGATTCTGAAGCTTG TGCTTTCTCGATTCACAATTTACTTCAAGCTGGAAAGAGTTACGGTCTGGCTGCTGGATC ATGGGTAGGTCCATACGCCATGTGCCGGGCATGGCAAACCCTTGTCTGTACCAATAGGGA GCATCATGAAGCTGTAGATGGGAATGGGAATTTTCCTATGGCTCTTTATGTGGTATCTGG TGATGAAGATGGTGAAAGAGGGGGAGCTCCAGTTGTTTGTATTGATGTTGCTGCTCAGCT TTGCTGTGATTTCAACAAAAATCAATCAACCTGGTCTCCGATTCTTTTGTTGGTCCCTCT GGTTCTTGGTCTTGACAAACTTAATCCAAGGTACATTCCTTTACTAAAGGAGACATTGAC ATTTCCTCAAAGCTTGGGCATTTTGGGTGGAAAGCCTGGAACATCAACCTACATTGCTGG GGTACAGGATGACAGGGCGCTCTACCTAGACCCCCATGAAGTTCAGCTGGCAGTTGATAT TGCAGCTGATAACTTAGAGGCAGGCACTTCCTCATATCACTGCAGCACTGTACGAGATTT GGCCCTAGACCTGATAGACCCGTCATTGGCTATCGGTTTTTACTGCCGTGACAAAGACGA CTTTGATGATTTCTGTTCTCGGGCCTCTGAGCTAGTGGACAAAGCCAATGGAGCACCACT CTTCACCGTTGTGCAGTCGGTTCAACCTTCAAAACAAATGTATAATGAGGAGAGTAGCTC AGGGGATGGCATGGACAGCATCAACGTTGAGGGTCTCGATGGCTCTGGTGAAACGGGAGA GGAGGAATGGCAGATTCTTTAGTGATGAAGTGGAAAAAAACTGACTTCACGAGGAAACTG AAAAAAATGTTGCGTCCAACACATCGGTGGAATGCCCTTGTTTTATGTGTGGGTGAATGA ATAGAAATGACTCGTTATTTTAGAGTGTGTAGAGAACAAGCTGGACTGTCTCAATAGCCC AGGGGAGCTGGGAAAAATCGGCGTTGGGTACGTGCTACCGATGTAAAAATGTGATCAGTT CATCGCTCATTCGTTGGAAATTTTCTTGTGTC