Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Oryza sativa subsp. japonica) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Oryza sativa

CDS Sequence

CDS ID

Os03t0390700-01
CDS Infomation

cds chromosome:IRGSP-1.0:3:15648919:15652111:1 gene:Os03g0390700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transthyretin-like protein. (Os03t0390700-01)
Sequence

ATGGCCACGACGCGGGGGCAGCTGCCCGTCGAGGACGTGCTGCGCGTGAACGGGAGCCGG
CGATTCGCCGCCGCGCTGGCCGCCGCCTCCCCCTTCGCCTCCCTCGCCGACGCCCTCCTC
GCCGCCCGCCGCATCTGGCTCAACGAGGTGGACGTCAACGGGTGGCTGGAGGCCTTCGCC
GCGCACCCGGCCATCGGCACCACCTCCTCCTCCGCCCCCAAGTGGTGCAAGGAGGAGCAA
TCAGCAGCGCTTGCAACTGCCACTGATTCGACCGCGCAGGAGTTGGCAGATTGGAATGCC
AGGTATAGGGAGAAGTTTGGGTTTGTGTTCATGATATGCGCGTCTGGGAGGACTGCCCCT
GAGGTCTTAGCGGAGCTTAAGAGGCGCTATGAAAATAGGCCAATTGTTGAACTTGAGATC
GCAGCACAGGAAGAACTGAAGATAACTGAACTGCGTCTTGCAAAGCTTTTTGCATCAGAG
CCTGTTGCCCCCCCTTCTTCAACGGTTGGAGGTCCTACTAGCCAATCGGATAAAGCAGCA
GACCGCATGCGGATTATTGGAGCACATCTTGGATCTCACACCCAGCATTCTGCCAATAAA
GCTCCTGAAATTACAGGTAGCTCCAACCGAACTCGCCCTCCGATCACAACCCATGTTTTG
GATGTCGCTCGTGGATCGCCAGCATCAGGAATTGAAGTTCACCTAGAGATGTGGAAGGAT
GCATCAACACCCCCATCATTCAACAACAAAGATTTCAATGGATGGGCAACCCTGGGCTCA
TCGGTTACGAACAACGATGGCCGCAGCGGTCAACTGATGGACATTGTCAATAACGTCGCT
CCTGGTTTCTACCGCATAAGTTTCAACACCAGCAAGTATGCACCTTCAGGGTTCTTCCCT
TATGTGAGCATCATATTTGAGATAAAAAAGAACCAGACGACCGAGCATTTCCATGTCCCT
CTGTTGCATTCTCCTTTTTCATTCACCACTTACCGTGGCAGTTAA

Peptide Sequence

PEP ID

Os03t0390700-01
PEP Infomation

pep chromosome:IRGSP-1.0:3:15648919:15652111:1 gene:Os03g0390700 transcript:Os03t0390700-01 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transthyretin-like protein. (Os03t0390700-01)
Sequence

MATTRGQLPVEDVLRVNGSRRFAAALAAASPFASLADALLAARRIWLNEVDVNGWLEAFA
AHPAIGTTSSSAPKWCKEEQSAALATATDSTAQELADWNARYREKFGFVFMICASGRTAP
EVLAELKRRYENRPIVELEIAAQEELKITELRLAKLFASEPVAPPSSTVGGPTSQSDKAA
DRMRIIGAHLGSHTQHSANKAPEITGSSNRTRPPITTHVLDVARGSPASGIEVHLEMWKD
ASTPPSFNNKDFNGWATLGSSVTNNDGRSGQLMDIVNNVAPGFYRISFNTSKYAPSGFFP
YVSIIFEIKKNQTTEHFHVPLLHSPFSFTTYRGS

Transcript Sequence

Transcript ID

Os03t0390700-01
Transcript Infomation

cdna chromosome:IRGSP-1.0:3:15648919:15652111:1 gene:Os03g0390700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Similar to Transthyretin-like protein. (Os03t0390700-01)
Sequence

AGTACGCCCGGAGCTCGCATCGCATCACCGGCTGAGAGAGATCCTAATTCCGAGATGGCC
ACGACGCGGGGGCAGCTGCCCGTCGAGGACGTGCTGCGCGTGAACGGGAGCCGGCGATTC
GCCGCCGCGCTGGCCGCCGCCTCCCCCTTCGCCTCCCTCGCCGACGCCCTCCTCGCCGCC
CGCCGCATCTGGCTCAACGAGGTGGACGTCAACGGGTGGCTGGAGGCCTTCGCCGCGCAC
CCGGCCATCGGCACCACCTCCTCCTCCGCCCCCAAGTGGTGCAAGGAGGAGCAATCAGCA
GCGCTTGCAACTGCCACTGATTCGACCGCGCAGGAGTTGGCAGATTGGAATGCCAGGTAT
AGGGAGAAGTTTGGGTTTGTGTTCATGATATGCGCGTCTGGGAGGACTGCCCCTGAGGTC
TTAGCGGAGCTTAAGAGGCGCTATGAAAATAGGCCAATTGTTGAACTTGAGATCGCAGCA
CAGGAAGAACTGAAGATAACTGAACTGCGTCTTGCAAAGCTTTTTGCATCAGAGCCTGTT
GCCCCCCCTTCTTCAACGGTTGGAGGTCCTACTAGCCAATCGGATAAAGCAGCAGACCGC
ATGCGGATTATTGGAGCACATCTTGGATCTCACACCCAGCATTCTGCCAATAAAGCTCCT
GAAATTACAGGTAGCTCCAACCGAACTCGCCCTCCGATCACAACCCATGTTTTGGATGTC
GCTCGTGGATCGCCAGCATCAGGAATTGAAGTTCACCTAGAGATGTGGAAGGATGCATCA
ACACCCCCATCATTCAACAACAAAGATTTCAATGGATGGGCAACCCTGGGCTCATCGGTT
ACGAACAACGATGGCCGCAGCGGTCAACTGATGGACATTGTCAATAACGTCGCTCCTGGT
TTCTACCGCATAAGTTTCAACACCAGCAAGTATGCACCTTCAGGGTTCTTCCCTTATGTG
AGCATCATATTTGAGATAAAAAAGAACCAGACGACCGAGCATTTCCATGTCCCTCTGTTG
CATTCTCCTTTTTCATTCACCACTTACCGTGGCAGTTAAGTTAGCCTGTCCCCAAGTCTG
CGAGATGCTGCATATTCCATCTGAAAAGTTCGTGTGTAATATTCCTCTTGGTAGCAAAAT
GTCGGGAAAACAAGTTTGCTTTGGTAGCAAGGGTTGCCTGTTTATGTGCACTGACATTAT
GATGCAAGAATAAATTTGATATACTAAAATGTATACAGAAGCTTGATGTCTATAGTACTA
AAGTTTCAGTGCATGGTTTGGTACG